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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0475000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0432) R2 : 0.57
β1 : 1.53 (0.159) R2dD : 0.0916 R2D : -0.0397
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.39 (0.117) R2dE : 0.401 R2E : 0.291
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.26 (0.0925) R2dN8 : 0.237 R2N8 : 0.106
σ : 0.808
deviance : 301.31
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.62
memory length : 224
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.183
open length of G : 4.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
296.44 0.809 5.5 1.5 0.327 -2.31 0.658 0.0987 1.26 14.1 18.7 240 0.267 4.36
296.38 0.802 5.5 1.5 0.329 -2.32 0.634 -- 1.26 14.1 18.7 240 0.284 4.35
297.72 0.804 5.5 1.48 0.316 -2.34 -- -0.127 1.24 14.2 18.66 239 0.317 4.28
297.7 0.804 5.51 1.52 0.313 -2.34 -- -- 1.25 14.5 18.61 240 0.333 4.23
301.21 0.808 5.51 1.51 -- -2.38 -- -0.237 1.26 -- 18.65 224 0.184 4.64
402.83 0.941 5.55 1.31 1.78 -- 1.17 -- 1.18 16.3 -- -- -- --
406.57 0.944 5.54 1.32 1.79 -- -- -- 1.18 16.4 -- -- -- --
301.31 0.808 5.5 1.53 -- -2.39 -- -- 1.26 -- 18.62 224 0.183 4.63
358.09 0.881 5.54 -- 0.341 -2.14 -- -- 1.11 15.5 18.7 225 0.3 4.42
579.48 1.12 5.53 1.25 -- -- -- -- 1.14 -- -- -- -- --
452.7 0.995 5.58 -- 1.77 -- -- -- 1.04 16.4 -- -- -- --
362.8 0.887 5.54 -- -- -2.28 -- -- 1.08 -- 18.7 222 0.181 4.68
620.83 1.16 5.56 -- -- -- -- -- 0.997 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.20 temperature 10.0 270 > th dose dependent rect. 24 5
5 304.64 temperature 10.0 270 > th dose dependent rect. 1 2
9 305.82 temperature 20.0 270 > th dose independent rect. 24 4
10 305.89 humidity 80.0 270 > th dose independent rect. 24 5
13 308.30 temperature 15.0 270 > th dose independent rect. 5 19
16 309.41 temperature 20.0 90 > th dose independent rect. 2 3
18 309.68 humidity 50.0 270 > th dose dependent rect. 24 4
20 310.43 wind 9.0 270 < th dose dependent rect. 24 4
22 310.49 humidity 50.0 270 > th dose dependent rect. 1 2
26 311.02 humidity 80.0 270 > th dose independent rect. 1 2
29 311.33 wind 9.0 270 < th dose dependent rect. 1 2
31 311.78 temperature 15.0 270 > th dose independent rect. 18 6
32 311.81 precipitation 0.1 270 < th dose independent rect. 4 20
33 311.81 precipitation 0.1 270 < th dose dependent rect. 4 20
35 311.91 wind 9.0 270 < th dose independent rect. 24 4
36 311.91 temperature 10.0 270 > th dose independent rect. 24 4
37 311.91 temperature 30.0 270 < th dose independent rect. 24 4
38 311.91 humidity 50.0 270 > th dose independent rect. 24 4
41 311.91 atmosphere 995.0 270 > th dose independent rect. 24 4
42 311.91 radiation 1.0 270 < th dose independent rect. 24 4
48 311.91 radiation 1.0 270 < th dose dependent rect. 24 4
53 311.92 atmosphere 1015.0 270 < th dose independent rect. 24 4
70 312.46 precipitation 0.1 270 < th dose independent rect. 24 4
81 312.46 precipitation 0.1 270 < th dose dependent rect. 24 4
85 312.56 precipitation 0.1 270 < th dose independent rect. 1 2
86 312.56 precipitation 0.1 270 < th dose dependent rect. 1 2
93 312.81 wind 9.0 270 < th dose independent rect. 1 2
94 312.81 temperature 10.0 270 > th dose independent rect. 1 2
96 312.81 temperature 30.0 270 < th dose independent rect. 1 2
97 312.81 humidity 50.0 270 > th dose independent rect. 1 2
100 312.81 atmosphere 995.0 270 > th dose independent rect. 1 2
101 312.81 atmosphere 1010.0 270 < th dose independent rect. 1 2
103 312.81 radiation 1.0 270 < th dose independent rect. 1 2
108 312.81 temperature 10.0 270 > th dose independent rect. 3 22
109 312.81 radiation 1.0 270 < th dose dependent rect. 1 2
124 313.28 wind 3.0 270 < th dose independent rect. 24 4
128 313.38 wind 9.0 270 < th dose independent rect. 4 20
131 313.70 wind 3.0 270 < th dose independent rect. 1 2
136 314.08 precipitation 0.1 270 < th dose independent rect. 3 22
137 314.08 precipitation 0.1 270 < th dose dependent rect. 3 22
139 314.13 radiation 1.0 270 < th dose dependent rect. 24 17
149 314.59 humidity 50.0 270 > th dose independent rect. 4 20
150 314.63 radiation 1.0 270 < th dose dependent rect. 24 8
158 315.17 radiation 1.0 270 < th dose independent rect. 24 17
159 315.17 wind 1.0 270 > th dose independent rect. 4 20
163 315.49 temperature 15.0 10 > th dose dependent rect. 2 4
172 315.80 wind 9.0 270 < th dose independent rect. 3 22
213 316.32 radiation 1.0 270 < th dose dependent rect. 23 20
233 317.22 atmosphere 995.0 270 > th dose independent rect. 5 19
236 317.32 radiation 1.0 90 < th dose dependent sin 3 NA
237 317.35 radiation 1.0 270 < th dose independent rect. 24 8
251 317.71 temperature 15.0 10 > th dose independent rect. 6 20
275 318.22 temperature 20.0 10 > th dose independent rect. 2 4
358 319.26 humidity 80.0 10 > th dose independent rect. 2 4
369 319.52 radiation 1.0 270 < th dose independent rect. 23 20
378 319.65 precipitation 0.1 270 < th dose independent rect. 18 6
380 319.65 precipitation 0.1 270 < th dose dependent rect. 18 6
387 319.70 wind 1.0 270 > th dose independent rect. 24 4
451 320.63 precipitation 0.1 270 < th dose independent rect. 24 18
452 320.63 precipitation 0.1 270 < th dose dependent rect. 24 18
464 320.95 atmosphere 995.0 90 > th dose dependent rect. 2 3
472 321.07 humidity 50.0 270 > th dose independent rect. 18 6
473 321.07 radiation 20.0 270 < th dose independent rect. 18 6
476 321.07 temperature 10.0 270 > th dose independent rect. 24 18
477 321.08 atmosphere 1015.0 270 < th dose independent rect. 24 18
485 321.15 radiation 40.0 270 < th dose dependent rect. 18 6
490 321.22 wind 9.0 270 < th dose independent rect. 18 6
493 321.26 atmosphere 995.0 270 > th dose independent rect. 18 6
496 321.38 wind 9.0 270 < th dose independent rect. 24 18
501 321.41 precipitation 0.1 10 < th dose independent rect. 6 20
502 321.41 precipitation 0.1 10 < th dose dependent rect. 6 20
508 321.51 precipitation 0.1 90 < th dose independent rect. 5 10
509 321.51 precipitation 0.1 90 < th dose dependent rect. 5 10
544 321.75 humidity 60.0 10 > th dose dependent rect. 2 4
550 321.81 wind 1.0 270 > th dose independent rect. 1 2
557 321.97 atmosphere 995.0 270 > th dose dependent rect. 24 4
562 322.01 wind 1.0 90 > th dose independent rect. 5 10
564 322.06 atmosphere 995.0 90 > th dose independent rect. 5 10
574 322.22 atmosphere 1015.0 270 < th dose independent rect. 5 19
594 322.52 temperature 10.0 90 > th dose independent rect. 5 10
595 322.52 atmosphere 1015.0 90 < th dose independent rect. 5 10
596 322.52 temperature 10.0 90 > th dose independent rect. 15 14
603 322.63 radiation 20.0 10 < th dose dependent rect. 2 4
621 323.09 radiation 40.0 90 < th dose independent rect. 15 14
622 323.14 precipitation 0.1 270 < th dose independent rect. 19 4
624 323.14 precipitation 0.1 270 < th dose dependent rect. 19 4
630 323.19 radiation 40.0 270 < th dose independent rect. 13 15
664 323.49 wind 1.0 270 > th dose independent rect. 18 6
690 323.68 wind 9.0 1440 < th dose independent rect. 3 3
691 323.68 temperature 10.0 1440 > th dose independent rect. 3 3
694 323.68 temperature 30.0 1440 < th dose independent rect. 3 3
698 323.68 humidity 50.0 1440 > th dose independent rect. 3 3
707 323.68 atmosphere 995.0 1440 > th dose independent rect. 3 3
708 323.68 radiation 20.0 1440 < th dose independent rect. 3 3
717 323.68 temperature 10.0 1440 > th dose independent rect. 6 21
727 323.71 wind 9.0 90 < th dose independent rect. 5 10
728 323.71 wind 9.0 90 < th dose independent rect. 15 14
734 323.82 radiation 1.0 90 > th dose independent sin 3 NA
746 323.99 wind 9.0 10 < th dose dependent rect. 2 4
748 324.03 wind 3.0 10 < th dose independent rect. 2 4
756 324.27 wind 9.0 10 < th dose independent rect. 2 4
757 324.27 temperature 10.0 10 > th dose independent rect. 2 4
759 324.27 temperature 30.0 10 < th dose independent rect. 2 4
760 324.27 humidity 50.0 10 > th dose independent rect. 2 4
763 324.27 atmosphere 995.0 10 > th dose independent rect. 2 4
764 324.27 atmosphere 1010.0 10 < th dose independent rect. 2 4
766 324.27 radiation 20.0 10 < th dose independent rect. 2 4
770 324.27 wind 9.0 270 < th dose dependent rect. 24 18
784 324.44 temperature 30.0 270 < th dose independent rect. 19 5
816 324.67 wind 1.0 270 > th dose independent rect. 19 4
849 324.92 radiation 1.0 90 < th dose independent sin 3 NA
851 324.93 atmosphere 995.0 10 > th dose independent rect. 6 20
867 325.10 humidity 50.0 270 > th dose independent rect. 4 10
868 325.11 wind 9.0 10 < th dose independent rect. 6 20
880 325.29 atmosphere 995.0 270 > th dose independent rect. 24 18
911 325.77 wind 9.0 270 < th dose dependent rect. 23 20
948 326.28 humidity 90.0 30 < th dose independent rect. 21 18
954 326.33 temperature 15.0 270 > th dose independent rect. 19 14