Os02g0474300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA topoisomerase, type IA family protein.
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Os02g0474300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA topoisomerase, type IA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.93 | 0.332 | 7.89 | 2.09 | 0.424 | 0.919 | -0.12 | -1.58 | 0.0769 | 14.5 | 29.25 | 10 | -- | -- |
| 51.62 | 0.337 | 7.92 | 1.8 | 0.359 | 0.947 | 0.376 | -- | 0.018 | 14.1 | 26.08 | 27 | -- | -- |
| 49.93 | 0.332 | 7.89 | 2.06 | 0.426 | 0.925 | -- | -1.46 | 0.0687 | 14.4 | 29.25 | 10 | -- | -- |
| 51.52 | 0.334 | 7.92 | 1.82 | 0.294 | 0.984 | -- | -- | -0.0124 | 14 | 24.4 | 17 | -- | -- |
| 57.14 | 0.354 | 7.91 | 1.98 | -- | 0.515 | -- | -1.6 | -0.0144 | -- | 29.25 | 10 | -- | -- |
| 65.14 | 0.378 | 7.96 | 1.58 | 0.116 | -- | 0.363 | -- | -0.187 | 13.7 | -- | -- | -- | -- |
| 65.52 | 0.379 | 7.96 | 1.59 | 0.13 | -- | -- | -- | -0.184 | 15.2 | -- | -- | -- | -- |
| 55.57 | 0.347 | 7.94 | 1.77 | -- | 0.927 | -- | -- | -0.0773 | -- | 22.71 | 24 | -- | -- |
| 130.75 | 0.535 | 7.99 | -- | 0.143 | 0.372 | -- | -- | -0.326 | 14.4 | 22.49 | 13 | -- | -- |
| 66.49 | 0.381 | 7.96 | 1.59 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 132.44 | 0.538 | 8 | -- | 0.0987 | -- | -- | -- | -0.361 | 15.2 | -- | -- | -- | -- |
| 131.85 | 0.535 | 8 | -- | -- | 0.295 | -- | -- | -0.33 | -- | 22.5 | 10 | -- | -- |
| 132.99 | 0.538 | 8 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 2 | 48.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 6 | 48.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 10 | 48.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 48.36 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 12 | 48.38 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 16 | 48.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 18 | 48.62 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 19 | 48.67 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 38 | 48.98 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 41 | 49.03 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 65 | 49.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 67 | 49.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 69 | 49.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 73 | 49.66 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 74 | 49.66 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 75 | 49.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 91 | 49.72 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 130 | 49.83 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 147 | 49.86 | wind | 3 | 43200 | > th | dose dependent | sin | 17 | NA |
| 150 | 49.87 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 151 | 49.88 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 165 | 49.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 175 | 49.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 200 | 49.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 211 | 50.01 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 218 | 50.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 229 | 50.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 236 | 50.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 248 | 50.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 262 | 50.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 276 | 50.11 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 285 | 50.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 286 | 50.12 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 292 | 50.13 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 296 | 50.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 300 | 50.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 307 | 50.15 | wind | 9 | 43200 | < th | dose dependent | sin | 20 | NA |
| 310 | 50.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 345 | 50.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 360 | 50.19 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 369 | 50.20 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 421 | 50.24 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 423 | 50.24 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 425 | 50.24 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 453 | 50.26 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 456 | 50.26 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 519 | 50.29 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 520 | 50.29 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 530 | 50.29 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 554 | 50.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 555 | 50.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 559 | 50.30 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 580 | 50.31 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 14 |
| 585 | 50.31 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 586 | 50.31 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 588 | 50.31 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 601 | 50.32 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 607 | 50.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 7 |
| 672 | 50.34 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 1 | NA |
| 673 | 50.34 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 700 | 50.34 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 716 | 50.35 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 781 | 50.36 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 799 | 50.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 801 | 50.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 806 | 50.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 826 | 50.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 836 | 50.38 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 0 | NA |
| 857 | 50.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 913 | 50.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 914 | 50.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |