Os02g0474000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0474000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.17 | 0.376 | 11 | -0.355 | 1.74 | 0.866 | -0.289 | -0.419 | 0.364 | 22 | 24.4 | 2522 | -- | -- |
| 64.39 | 0.374 | 11 | -0.247 | 1.75 | 0.846 | -0.354 | -- | 0.412 | 22 | 24.2 | 2535 | -- | -- |
| 64.49 | 0.374 | 11 | -0.357 | 1.73 | 0.87 | -- | -0.476 | 0.359 | 22 | 24.4 | 2515 | -- | -- |
| 64.76 | 0.375 | 11 | -0.21 | 1.75 | 0.831 | -- | -- | 0.412 | 22 | 24.26 | 2535 | -- | -- |
| 173.27 | 0.613 | 11 | -0.0684 | -- | 1.55 | -- | -0.0477 | 0.182 | -- | 25.29 | 756 | -- | -- |
| 85.73 | 0.434 | 11 | 0.103 | 1.84 | -- | -0.222 | -- | 0.692 | 22.3 | -- | -- | -- | -- |
| 85.93 | 0.434 | 11 | 0.111 | 1.84 | -- | -- | -- | 0.692 | 22.3 | -- | -- | -- | -- |
| 170.76 | 0.609 | 11 | -0.36 | -- | 1.66 | -- | -- | 0.103 | -- | 25.22 | 773 | -- | -- |
| 65.28 | 0.376 | 11 | -- | 1.73 | 0.73 | -- | -- | 0.451 | 22.3 | 24.3 | 2022 | -- | -- |
| 291.03 | 0.797 | 10.9 | 0.139 | -- | -- | -- | -- | 0.697 | -- | -- | -- | -- | -- |
| 86.25 | 0.434 | 11 | -- | 1.84 | -- | -- | -- | 0.68 | 22.3 | -- | -- | -- | -- |
| 173.95 | 0.614 | 11 | -- | -- | 1.59 | -- | -- | 0.165 | -- | 25.3 | 762 | -- | -- |
| 291.54 | 0.797 | 10.9 | -- | -- | -- | -- | -- | 0.681 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 4 | 63.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 8 | 64.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 13 | 64.19 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 20 |
| 33 | 64.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 53 | 65.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 58 | 65.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 69 | 65.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 71 | 65.41 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 75 | 65.44 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 79 | 65.47 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 84 | 65.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 103 | 65.64 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 20 |
| 128 | 65.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 16 |
| 132 | 65.80 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 133 | 65.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 136 | 65.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 156 | 65.89 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 175 | 65.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 195 | 66.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 5 |
| 274 | 66.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 275 | 66.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 287 | 66.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 289 | 66.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 316 | 66.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 324 | 66.27 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 345 | 66.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 369 | 66.33 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 391 | 66.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 456 | 66.42 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 467 | 66.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 487 | 66.45 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 502 | 66.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 521 | 66.48 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 523 | 66.48 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 524 | 66.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 535 | 66.49 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 556 | 66.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 566 | 66.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 587 | 66.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 695 | 66.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 714 | 66.65 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 735 | 66.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 762 | 66.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 818 | 66.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 832 | 66.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 851 | 66.76 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 878 | 66.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |