Os02g0473000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Riboflavin biosynthesis protein RibD family protein.
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Os02g0473000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Riboflavin biosynthesis protein RibD family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.77 | 0.285 | 9.8 | -0.725 | 0.306 | 1.02 | 0.336 | 0.721 | -0.449 | 19.4 | 24.58 | 109 | -- | -- |
| 36.99 | 0.283 | 9.81 | -0.814 | 0.296 | 1.07 | 0.381 | -- | -0.469 | 19.3 | 24.68 | 118 | -- | -- |
| 37.05 | 0.284 | 9.79 | -0.711 | 0.294 | 1.02 | -- | 0.857 | -0.443 | 19.5 | 24.57 | 118 | -- | -- |
| 37.33 | 0.285 | 9.81 | -0.831 | 0.285 | 1.11 | -- | -- | -0.473 | 19.7 | 24.65 | 118 | -- | -- |
| 39.37 | 0.292 | 9.79 | -0.767 | -- | 1.16 | -- | 0.692 | -0.476 | -- | 24.3 | 253 | -- | -- |
| 55.25 | 0.348 | 9.79 | -0.642 | 0.665 | -- | 0.941 | -- | -0.375 | 17.3 | -- | -- | -- | -- |
| 57.46 | 0.355 | 9.79 | -0.643 | 0.672 | -- | -- | -- | -0.37 | 17.3 | -- | -- | -- | -- |
| 39.6 | 0.293 | 9.81 | -0.862 | -- | 1.21 | -- | -- | -0.502 | -- | 24.31 | 253 | -- | -- |
| 54.59 | 0.344 | 9.78 | -- | 0.365 | 0.918 | -- | -- | -0.345 | 18.7 | 25.12 | 118 | -- | -- |
| 81.01 | 0.421 | 9.78 | -0.667 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 68.38 | 0.387 | 9.77 | -- | 0.683 | -- | -- | -- | -0.299 | 17.3 | -- | -- | -- | -- |
| 58.56 | 0.356 | 9.78 | -- | -- | 1.09 | -- | -- | -0.384 | -- | 24.61 | 252 | -- | -- |
| 92.73 | 0.449 | 9.76 | -- | -- | -- | -- | -- | -0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 2 | 34.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 16 | 34.56 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 35 | 34.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 40 | 35.04 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 92 | 35.58 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 163 | 36.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 219 | 36.65 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 225 | 36.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 253 | 36.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 260 | 36.83 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 266 | 36.87 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 268 | 36.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 269 | 36.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 304 | 36.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 344 | 37.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 381 | 37.25 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 396 | 37.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 398 | 37.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 431 | 37.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 439 | 37.34 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 468 | 37.40 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 8 |
| 785 | 38.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 877 | 38.39 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |