Os02g0470000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0470000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.82 | 0.677 | 6.86 | 3.46 | 1.73 | 1.09 | -1.63 | 7.66 | 0.209 | 19.4 | 0.4201 | 1423 | -- | -- |
| 238.76 | 0.725 | 6.98 | 2.58 | 1.62 | -0.277 | -1.42 | -- | 0.0427 | 18.9 | 0.4201 | 1423 | -- | -- |
| 212.72 | 0.679 | 6.86 | 3.52 | 1.77 | 1.11 | -- | 7.85 | 0.211 | 19.4 | 0.4276 | 1452 | -- | -- |
| 237.75 | 0.718 | 7.01 | 2.98 | 1.59 | 0.892 | -- | -- | -0.0314 | 19.4 | 9.666 | 8049 | -- | -- |
| 313.88 | 0.825 | 6.83 | 2.96 | -- | 2.72 | -- | 7.32 | 0.0663 | -- | 0.2317 | 2286 | -- | -- |
| 240.99 | 0.728 | 6.98 | 2.56 | 1.74 | -- | -1.46 | -- | 0.0381 | 19.5 | -- | -- | -- | -- |
| 246.93 | 0.736 | 6.98 | 2.59 | 1.74 | -- | -- | -- | 0.0359 | 19.5 | -- | -- | -- | -- |
| 294.05 | 0.799 | 7 | 2.72 | -- | 2.97 | -- | -- | -0.146 | -- | 1.917 | 2299 | -- | -- |
| 415.24 | 0.954 | 7.05 | -- | 1.96 | 0.492 | -- | -- | -0.239 | 20.5 | 10.01 | 11129 | -- | -- |
| 409.41 | 0.945 | 6.94 | 2.56 | -- | -- | -- | -- | 0.00843 | -- | -- | -- | -- | -- |
| 423.8 | 0.963 | 7.05 | -- | 1.72 | -- | -- | -- | -0.253 | 19.6 | -- | -- | -- | -- |
| 424.77 | 0.96 | 7.09 | -- | -- | 3.16 | -- | -- | -0.42 | -- | 0.5401 | 2334 | -- | -- |
| 582.82 | 1.13 | 7.01 | -- | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.81 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 4 | 206.13 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 18 | 207.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 21 | 207.96 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 24 | 208.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 26 | 208.06 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 28 | 208.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 33 | 208.17 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 43 | 208.46 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 47 | 208.56 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 55 | 208.64 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 81 | 209.12 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 83 | 209.18 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 86 | 209.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 89 | 209.31 | temperature | 20.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 114 | 209.67 | temperature | 20.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 121 | 209.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 151 | 210.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 156 | 210.18 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 159 | 210.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 162 | 210.23 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 166 | 210.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 172 | 210.29 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 179 | 210.32 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 180 | 210.33 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 181 | 210.33 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 183 | 210.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 194 | 210.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 195 | 210.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 207 | 210.39 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 257 | 210.60 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 264 | 210.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 274 | 210.72 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 399 | 211.53 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 410 | 211.59 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 450 | 211.80 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 451 | 211.80 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 463 | 211.88 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 464 | 211.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 507 | 212.07 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 510 | 212.08 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 522 | 212.14 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 532 | 212.19 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 546 | 212.24 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 584 | 212.44 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 625 | 212.65 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 638 | 212.70 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 658 | 212.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 691 | 212.90 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 1 | 16 |
| 731 | 213.05 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 737 | 213.08 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 767 | 213.19 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 810 | 213.33 | radiation | 1.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 883 | 213.57 | radiation | 1.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 903 | 213.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 906 | 213.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 945 | 213.75 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 966 | 213.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 970 | 213.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 988 | 213.85 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 996 | 213.88 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 12 | NA |