Os02g0469600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine proteinase 1 precursor (EC 3.4.22.-).
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Os02g0469600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine proteinase 1 precursor (EC 3.4.22.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.14 | 0.29 | 16 | 0.953 | 1.12 | -0.6 | -0.264 | 0.465 | 0.289 | 19 | 26 | 1279 | -- | -- |
| 38.41 | 0.289 | 16 | 0.904 | 1.13 | -0.559 | -0.128 | -- | 0.263 | 19 | 25.99 | 1279 | -- | -- |
| 38.29 | 0.288 | 16 | 0.981 | 1.12 | -0.619 | -- | 0.575 | 0.3 | 19 | 25.81 | 1251 | -- | -- |
| 38.38 | 0.289 | 16 | 0.838 | 1.11 | -0.552 | -- | -- | 0.266 | 19 | 25.75 | 1274 | -- | -- |
| 102.9 | 0.472 | 16 | 0.789 | -- | -0.582 | -- | -0.269 | 0.252 | -- | 24.5 | 1348 | -- | -- |
| 50.69 | 0.334 | 16 | 0.658 | 1.14 | -- | -0.261 | -- | 0.228 | 18.7 | -- | -- | -- | -- |
| 50.86 | 0.334 | 16 | 0.662 | 1.13 | -- | -- | -- | 0.227 | 18.7 | -- | -- | -- | -- |
| 102.87 | 0.472 | 16 | 0.853 | -- | -0.629 | -- | -- | 0.297 | -- | 24.4 | 1343 | -- | -- |
| 55.48 | 0.347 | 16.1 | -- | 1.11 | -0.38 | -- | -- | 0.106 | 18.9 | 28.28 | 1282 | -- | -- |
| 118 | 0.508 | 16 | 0.636 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 62.42 | 0.37 | 16.1 | -- | 1.13 | -- | -- | -- | 0.153 | 18.7 | -- | -- | -- | -- |
| 120.25 | 0.511 | 16 | -- | -- | -0.415 | -- | -- | 0.117 | -- | 27.09 | 1332 | -- | -- |
| 128.66 | 0.529 | 16 | -- | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.13 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 2 | 37.53 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 4 | 37.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 11 | 37.87 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 27 | 38.38 | temperature | 20.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 34 | 38.45 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 35 | 38.46 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 42 | 38.53 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 44 | 38.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 51 | 38.57 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 67 | 38.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 70 | 38.59 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 79 | 38.64 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 88 | 38.66 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 93 | 38.67 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 108 | 38.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 111 | 38.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 113 | 38.73 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 116 | 38.74 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 121 | 38.75 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 126 | 38.76 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 127 | 38.76 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 186 | 38.80 | temperature | 10.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 187 | 38.80 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 203 | 38.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 214 | 38.83 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 224 | 38.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 227 | 38.84 | temperature | 25.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 241 | 38.85 | temperature | 30.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 249 | 38.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 336 | 38.94 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 355 | 38.96 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 359 | 38.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 377 | 38.97 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 388 | 38.98 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 409 | 38.99 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 411 | 38.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 413 | 38.99 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 453 | 39.02 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 6 |
| 454 | 39.02 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 505 | 39.03 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 508 | 39.04 | temperature | 30.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 575 | 39.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 585 | 39.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 608 | 39.08 | temperature | 30.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 614 | 39.08 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 616 | 39.08 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 640 | 39.09 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 644 | 39.09 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 669 | 39.09 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 751 | 39.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 777 | 39.12 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 798 | 39.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 802 | 39.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 811 | 39.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 820 | 39.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 854 | 39.15 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 862 | 39.15 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 907 | 39.15 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 916 | 39.16 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 963 | 39.17 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 17 | 16 |