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Os02g0467700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyltransferase 28, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.67 (0.0147) R2 : 0.58
β1 : -0.98 (0.054) R2dD : 0.315 R2D : 0.302
β2 : 0.654 (0.0378) R2dC : 0.277 R2C : 0.264
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0038 (0.0315) R2dN8 : 1.8e-05 R2N8 : 0.000573
σ : 0.277
deviance : 35.09
__
_____
C
peak time of C : 4.31
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.99 0.257 9.75 -1.45 0.651 -0.17 0.0308 1.34 -0.164 4.33 20.22 5041 -- --
31.27 0.26 9.69 -1.22 0.65 -0.383 0.233 -- -0.102 3.99 19 5722 -- --
30 0.255 9.75 -1.45 0.651 -0.169 -- 1.34 -0.163 4.33 20.2 5023 -- --
30.77 0.258 9.7 -1.22 0.638 -0.487 -- -- -0.106 4.14 18.4 5582 -- --
52.37 0.337 9.74 -1.42 -- -0.264 -- 1.16 -0.152 -- 20.3 4036 -- --
35.09 0.278 9.67 -0.98 0.654 -- 0.0213 -- 0.00391 4.31 -- -- -- --
35.09 0.277 9.67 -0.98 0.654 -- -- -- 0.0038 4.31 -- -- -- --
52.77 0.338 9.7 -1.28 -- -0.517 -- -- -0.123 -- 18.8 5465 -- --
41.93 0.302 9.59 -- 0.679 0.652 -- -- 0.377 4.35 21.6 47520 -- --
58.15 0.356 9.67 -0.954 -- -- -- -- 0.0212 -- -- -- -- --
60.39 0.364 9.64 -- 0.636 -- -- -- 0.113 4.34 -- -- -- --
65.25 0.376 9.6 -- -- 0.602 -- -- 0.337 -- 22.01 47520 -- --
82.15 0.423 9.65 -- -- -- -- -- 0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.89 wind 9.0 14400 > th dose dependent rect. 21 16
3 27.91 wind 7.0 14400 > th dose dependent rect. 3 10
6 27.94 wind 9.0 14400 > th dose independent rect. 21 16
11 28.01 wind 9.0 14400 < th dose independent rect. 21 16
18 28.21 wind 7.0 14400 > th dose independent rect. 2 11
28 28.29 wind 7.0 14400 < th dose independent rect. 2 11
60 28.54 humidity 90.0 14400 > th dose independent rect. 12 2
63 28.54 temperature 20.0 90 > th dose independent rect. 19 20
80 28.60 wind 9.0 14400 < th dose independent sin 7 NA
81 28.60 wind 7.0 43200 > th dose dependent rect. 10 3
89 28.62 wind 9.0 14400 > th dose independent sin 7 NA
90 28.62 wind 9.0 43200 > th dose independent rect. 9 4
135 28.71 humidity 90.0 43200 > th dose dependent rect. 11 3
136 28.71 radiation 10.0 4320 > th dose dependent rect. 17 15
137 28.72 wind 9.0 43200 < th dose independent rect. 9 4
141 28.73 wind 9.0 43200 < th dose independent rect. 10 2
148 28.74 humidity 90.0 43200 > th dose independent rect. 10 4
154 28.74 humidity 90.0 43200 > th dose dependent rect. 13 1
162 28.75 wind 9.0 14400 > th dose dependent sin 7 NA
179 28.78 humidity 90.0 14400 < th dose independent rect. 12 2
180 28.78 radiation 40.0 4320 < th dose independent rect. 15 5
201 28.81 radiation 10.0 4320 > th dose dependent rect. 6 2
225 28.82 wind 3.0 43200 > th dose dependent rect. 2 2
227 28.82 wind 3.0 43200 > th dose dependent rect. 1 5
244 28.85 humidity 90.0 43200 < th dose independent rect. 10 4
256 28.86 humidity 90.0 43200 > th dose dependent rect. 10 6
309 28.91 temperature 30.0 14400 < th dose dependent rect. 12 1
310 28.91 wind 1.0 43200 > th dose dependent rect. 22 7
314 28.92 temperature 20.0 14400 < th dose independent rect. 19 1
349 28.95 temperature 20.0 14400 < th dose independent rect. 18 3
371 28.96 radiation 1.0 43200 < th dose dependent rect. 11 5
384 28.97 radiation 1.0 43200 < th dose dependent rect. 14 2
420 28.99 wind 9.0 43200 < th dose dependent rect. 22 7
423 28.99 atmosphere 995.0 43200 < th dose dependent rect. 16 21
428 29.00 temperature 20.0 14400 > th dose independent rect. 18 1
429 29.00 radiation 1.0 43200 < th dose independent rect. 11 2
434 29.00 temperature 20.0 10 > th dose independent rect. 20 19
445 29.01 precipitation 0.1 43200 < th dose independent rect. 6 6
451 29.01 temperature 25.0 14400 < th dose dependent rect. 8 2
452 29.01 radiation 1.0 43200 < th dose dependent rect. 11 2
461 29.01 precipitation 0.1 43200 < th dose dependent rect. 6 6
470 29.02 atmosphere 995.0 43200 > th dose independent rect. 6 2
471 29.02 radiation 1.0 43200 > th dose independent rect. 11 2
474 29.02 precipitation 0.1 43200 > th dose independent rect. 6 6
483 29.02 precipitation 0.1 43200 > th dose dependent rect. 6 6
509 29.04 temperature 20.0 14400 > th dose independent rect. 7 1
511 29.04 radiation 1.0 43200 < th dose independent rect. 14 1
546 29.06 temperature 20.0 14400 < th dose independent rect. 7 1
547 29.06 radiation 1.0 43200 > th dose independent rect. 14 1
548 29.06 radiation 20.0 4320 < th dose independent rect. 17 3
568 29.06 atmosphere 995.0 43200 < th dose dependent rect. 22 16
599 29.08 precipitation 0.1 43200 > th dose independent rect. 10 1
600 29.08 precipitation 0.1 43200 > th dose independent rect. 5 8
601 29.08 precipitation 0.1 43200 < th dose independent rect. 5 8
603 29.08 temperature 20.0 14400 < th dose independent rect. 16 9
605 29.08 atmosphere 995.0 43200 < th dose dependent sin 5 NA
606 29.08 precipitation 0.1 43200 > th dose dependent rect. 10 1
615 29.08 precipitation 0.1 43200 < th dose dependent rect. 5 8
632 29.09 atmosphere 995.0 43200 > th dose independent rect. 5 6
640 29.09 radiation 20.0 4320 < th dose independent rect. 20 13
642 29.09 temperature 20.0 14400 < th dose independent rect. 4 18
666 29.10 temperature 20.0 14400 < th dose independent sin 16 NA
672 29.10 radiation 20.0 4320 < th dose independent rect. 4 5
674 29.10 radiation 20.0 4320 < th dose independent rect. 2 7
677 29.10 atmosphere 995.0 43200 > th dose independent rect. 4 8
682 29.10 radiation 20.0 4320 < th dose independent rect. 22 11
686 29.10 temperature 20.0 14400 < th dose independent rect. 4 21
708 29.11 atmosphere 995.0 43200 < th dose independent rect. 5 5
711 29.11 atmosphere 995.0 43200 < th dose independent rect. 4 8
716 29.11 atmosphere 995.0 43200 < th dose independent rect. 3 11
721 29.11 temperature 20.0 14400 > th dose independent rect. 4 18
723 29.11 temperature 20.0 14400 > th dose independent rect. 5 20
733 29.11 wind 3.0 43200 > th dose dependent sin 6 NA
745 29.11 atmosphere 995.0 43200 < th dose dependent rect. 2 9
749 29.11 atmosphere 995.0 43200 < th dose dependent rect. 1 11
781 29.12 temperature 25.0 14400 < th dose dependent rect. 18 1
783 29.12 wind 9.0 43200 < th dose dependent rect. 1 2
786 29.12 atmosphere 995.0 43200 < th dose dependent rect. 5 3
792 29.12 atmosphere 995.0 43200 < th dose dependent rect. 3 7
830 29.13 temperature 20.0 14400 > th dose independent rect. 14 13
844 29.13 temperature 20.0 14400 > th dose independent rect. 24 22
846 29.13 temperature 20.0 14400 < th dose independent rect. 24 22
854 29.13 atmosphere 995.0 43200 < th dose dependent rect. 4 5
876 29.14 temperature 20.0 14400 > th dose independent sin 16 NA
886 29.14 temperature 20.0 14400 > th dose independent rect. 15 11
918 29.14 wind 5.0 43200 > th dose dependent rect. 12 1
937 29.14 temperature 10.0 270 > th dose dependent rect. 18 20
941 29.15 temperature 25.0 14400 > th dose independent rect. 11 1
944 29.15 precipitation 0.1 43200 < th dose independent rect. 10 1
984 29.15 precipitation 0.1 43200 < th dose dependent rect. 10 1
999 29.16 temperature 25.0 14400 < th dose independent rect. 11 1
1000 29.16 radiation 10.0 4320 > th dose independent rect. 6 1