FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0467600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamate 4-hydroxylase CYP73.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0608) R2 : 0.198
β1 : -0.898 (0.225) R2dD : 0.0306 R2D : 0.0546
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.47 (0.289) R2dE : 0.153 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.137) R2dN8 : 0.00307 R2N8 : -0.00706
σ : 1.12
deviance : 576.15
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.134
memory length : 1543
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 18
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
567.9 1.12 3.61 -0.97 0.378 2.24 -0.786 -0.55 0.112 3.54 4.534 1505 16.5 --
567.99 1.11 3.6 -0.983 0.362 2.35 -0.797 -- 0.122 3.32 4.298 1517 17.1 --
569.65 1.11 3.61 -0.954 0.357 2.27 -- -0.493 0.113 3.7 4.525 1517 16.9 --
570 1.11 3.61 -0.985 0.369 2.35 -- -- 0.115 3.7 4.36 1518 16.9 --
575.76 1.12 3.6 -0.827 -- 2.37 -- -0.639 0.143 -- 4.299 1541 17.9 --
656.51 1.2 3.71 -1.4 0.338 -- -1.15 -- -0.307 2.08 -- -- -- --
661.54 1.2 3.7 -1.37 0.336 -- -- -- -0.3 2.04 -- -- -- --
576.15 1.12 3.6 -0.898 -- 2.47 -- -- 0.146 -- 4.134 1543 18 --
589.98 1.13 3.59 -- 0.279 2.92 -- -- 0.26 3.48 3.291 1537 18 --
668.32 1.21 3.7 -1.35 -- -- -- -- -0.292 -- -- -- -- --
710.74 1.25 3.67 -- 0.31 -- -- -- -0.148 1.93 -- -- -- --
592.87 1.13 3.57 -- -- 2.98 -- -- 0.275 -- 3.232 1543 18.6 --
716.56 1.25 3.67 -- -- -- -- -- -0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 566.21 radiation 10 720 < th dose dependent rect. 16 10
2 573.48 radiation 10 720 < th dose dependent rect. 16 1
5 575.97 radiation 1 720 < th dose independent rect. 5 23
6 576.63 radiation 1 720 < th dose independent rect. 5 14
9 577.89 wind 7 43200 > th dose dependent rect. 15 3
10 578.00 radiation 10 1440 < th dose dependent rect. 8 13
13 578.02 radiation 10 1440 < th dose dependent rect. 8 16
16 578.11 radiation 10 1440 < th dose dependent rect. 8 19
22 578.41 wind 7 43200 > th dose dependent rect. 15 1
24 578.61 radiation 1 1440 < th dose independent rect. 8 22
28 579.12 radiation 1 720 < th dose independent rect. 14 5
29 579.16 radiation 20 1440 > th dose independent rect. 12 21
32 579.47 radiation 1 1440 < th dose independent rect. 12 18
35 579.57 radiation 1 720 > th dose independent rect. 11 19
36 579.68 radiation 1 1440 > th dose independent rect. 8 22
58 581.23 radiation 1 720 < th dose independent rect. 14 14
72 581.50 radiation 20 1440 < th dose dependent rect. 13 8
80 581.65 radiation 1 720 < th dose dependent rect. 5 14
81 581.66 radiation 20 1440 < th dose dependent rect. 13 14
88 581.86 wind 9 43200 > th dose dependent rect. 14 7
89 581.95 radiation 10 1440 < th dose dependent sin 20 NA
91 582.09 wind 9 43200 > th dose dependent rect. 12 9
100 582.38 radiation 20 1440 < th dose dependent sin 17 NA
117 582.76 radiation 20 1440 > th dose independent rect. 12 4
145 582.95 wind 9 43200 > th dose independent rect. 14 7
163 583.17 wind 9 43200 < th dose independent rect. 14 5
165 583.19 radiation 1 720 < th dose independent rect. 22 21
167 583.20 radiation 1 720 < th dose dependent rect. 5 23
169 583.23 wind 9 43200 > th dose independent rect. 14 5
184 583.43 radiation 10 1440 > th dose independent rect. 8 10
207 583.63 radiation 1 720 < th dose independent sin 23 NA
214 583.70 radiation 1 720 < th dose independent sin 14 NA
244 584.01 radiation 10 1440 > th dose independent rect. 16 23
250 584.18 radiation 10 1440 > th dose independent sin 22 NA
259 584.23 wind 7 43200 > th dose independent rect. 17 1
268 584.38 radiation 1 720 < th dose independent rect. 14 19
269 584.39 wind 9 43200 < th dose independent rect. 14 8
295 584.65 wind 9 43200 < th dose independent rect. 12 10
370 585.24 radiation 10 1440 > th dose independent no NA NA
371 585.24 radiation 10 1440 > th dose independent rect. 5 13
457 585.28 wind 9 43200 > th dose independent rect. 11 17
544 585.74 wind 7 43200 < th dose independent rect. 17 1
574 585.93 wind 9 43200 < th dose independent rect. 10 8
599 586.06 radiation 1 1440 < th dose independent rect. 8 16
603 586.06 wind 9 43200 > th dose dependent rect. 11 17
617 586.14 wind 9 43200 < th dose independent rect. 11 17
630 586.23 wind 9 43200 > th dose independent rect. 10 8
821 586.61 radiation 10 720 < th dose independent rect. 16 1
888 586.84 wind 9 43200 < th dose independent rect. 15 1
922 586.98 radiation 1 1440 > th dose independent sin 15 NA
997 587.22 radiation 1 720 < th dose independent rect. 3 23