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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0467500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C48, SUMO/Sentrin/Ubl1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0454) R2 : 0.00353
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0957) R2dN8 : 0.00456 R2N8 : 0.00353
σ : 0.856
deviance : 336.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.72 0.847 2.94 0.272 0.172 0.647 0.127 0.614 0.226 9.74 1014 7480 -- --
325.76 0.841 2.92 0.359 0.196 0.566 0.203 -- 0.262 9.71 1014 7872 -- --
324.77 0.839 2.94 0.284 0.169 0.654 -- 0.614 0.226 9.68 1015 7507 -- --
325.6 0.84 2.92 0.361 0.169 0.512 -- -- 0.249 9.78 1014 7889 -- --
326.37 0.841 2.96 0.353 -- 1.04 -- 1.4 0.239 -- 1015 7308 -- --
333.97 0.857 2.94 0.116 0.169 -- 0.13 -- 0.134 9.78 -- -- -- --
334.04 0.856 2.94 0.121 0.168 -- -- -- 0.135 9.74 -- -- -- --
327.35 0.843 2.92 0.36 -- 0.512 -- -- 0.249 -- 1014 7891 -- --
328.56 0.844 2.93 -- 0.175 0.405 -- -- 0.199 9.47 1014 7914 -- --
335.73 0.856 2.95 0.119 -- -- -- -- 0.135 -- -- -- -- --
334.42 0.855 2.94 -- 0.168 -- -- -- 0.121 9.68 -- -- -- --
330.25 0.846 2.93 -- -- 0.392 -- -- 0.187 -- 1014 7909 -- --
336.1 0.856 2.95 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.55 radiation 30.0 30 > th dose dependent rect. 15 17
4 310.03 radiation 30.0 30 > th dose independent rect. 15 17
17 313.99 precipitation 0.1 90 > th dose independent rect. 13 1
20 313.99 precipitation 0.1 90 > th dose dependent rect. 13 1
23 314.09 radiation 10.0 10 < th dose dependent rect. 14 1
25 314.10 humidity 70.0 10 < th dose dependent rect. 15 18
29 314.38 radiation 10.0 10 < th dose independent rect. 14 1
32 314.78 radiation 40.0 90 > th dose independent rect. 15 1
49 314.78 radiation 40.0 90 > th dose dependent rect. 15 1
66 315.02 radiation 10.0 90 < th dose independent rect. 12 1
76 315.74 radiation 20.0 90 > th dose dependent rect. 16 15
78 315.89 radiation 10.0 90 < th dose dependent rect. 12 1
107 317.30 atmosphere 1005.0 30 > th dose dependent rect. 12 2
113 317.99 radiation 20.0 10 > th dose dependent rect. 16 1
144 318.01 radiation 20.0 10 > th dose independent rect. 16 1
175 318.18 atmosphere 1005.0 30 > th dose dependent rect. 12 5
190 318.39 temperature 25.0 10 < th dose dependent rect. 13 1
221 318.90 wind 1.0 90 < th dose dependent rect. 15 1
231 319.24 humidity 60.0 10 < th dose independent rect. 15 3
232 319.31 humidity 60.0 10 < th dose independent rect. 15 1
256 319.54 temperature 20.0 30 > th dose independent rect. 2 1
257 319.55 radiation 40.0 30 < th dose independent sin 13 NA
296 319.67 humidity 60.0 10 < th dose dependent rect. 15 3
297 319.68 humidity 60.0 10 < th dose dependent rect. 15 1
344 320.06 humidity 70.0 10 < th dose dependent sin 12 NA
348 320.09 temperature 15.0 30 > th dose dependent rect. 2 1
364 320.13 atmosphere 1005.0 30 > th dose dependent rect. 12 8
367 320.16 atmosphere 1000.0 30 > th dose independent rect. 2 1
389 320.21 temperature 25.0 30 < th dose independent rect. 2 1
392 320.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
394 320.26 atmosphere 995.0 30 > th dose dependent rect. 2 1
395 320.28 humidity 80.0 30 > th dose independent rect. 2 1
464 320.37 wind 9.0 30 < th dose independent rect. 2 1
465 320.37 temperature 10.0 30 > th dose independent rect. 2 1
468 320.37 humidity 50.0 30 > th dose independent rect. 2 1
472 320.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
474 320.37 radiation 1.0 30 < th dose independent rect. 2 1
479 320.37 precipitation 0.1 30 < th dose independent rect. 2 1
480 320.37 temperature 10.0 30 > th dose independent rect. 3 23
481 320.37 radiation 1.0 30 < th dose dependent rect. 2 1
486 320.37 precipitation 0.1 30 < th dose dependent rect. 2 1
489 320.40 wind 5.0 30 < th dose independent rect. 2 1
491 320.40 humidity 50.0 30 > th dose dependent rect. 2 1
492 320.41 wind 1.0 90 < th dose independent rect. 15 1
494 320.43 wind 9.0 30 < th dose dependent rect. 2 1
547 320.67 atmosphere 1000.0 30 > th dose independent rect. 12 2
562 320.87 wind 9.0 1440 < th dose independent rect. 12 2
565 320.91 atmosphere 1015.0 30 < th dose dependent rect. 2 1
589 321.03 wind 3.0 10 < th dose dependent rect. 16 1
594 321.06 humidity 80.0 10 > th dose dependent rect. 14 1
645 321.19 wind 9.0 30 < th dose independent rect. 3 23
682 321.31 temperature 30.0 30 < th dose dependent rect. 2 1
707 321.73 precipitation 0.1 90 > th dose dependent rect. 7 8
746 321.84 temperature 30.0 90 < th dose independent rect. 12 1
755 321.87 wind 7.0 720 > th dose dependent rect. 12 1
762 321.88 wind 3.0 10 < th dose independent rect. 16 1
767 321.92 humidity 60.0 90 > th dose dependent rect. 12 1
781 322.05 wind 1.0 30 > th dose independent rect. 2 1
788 322.09 humidity 80.0 10 > th dose independent rect. 14 1
813 322.21 radiation 20.0 10 > th dose independent sin 12 NA
838 322.34 atmosphere 1000.0 90 > th dose dependent rect. 12 11
878 322.51 humidity 70.0 90 > th dose independent rect. 12 1
884 322.61 humidity 80.0 90 < th dose independent rect. 12 1
886 322.62 humidity 60.0 90 > th dose independent sin 13 NA
887 322.62 wind 9.0 720 > th dose independent rect. 12 2
898 322.73 temperature 25.0 90 < th dose independent rect. 12 3
900 322.75 wind 5.0 10 < th dose dependent rect. 14 1
922 322.83 atmosphere 995.0 90 > th dose dependent rect. 12 15
935 322.93 wind 7.0 90 < th dose independent rect. 12 1
939 322.94 wind 1.0 90 > th dose independent rect. 12 1
956 323.04 radiation 30.0 30 > th dose dependent rect. 7 2
997 323.07 atmosphere 1005.0 30 > th dose independent rect. 12 5
999 323.11 humidity 60.0 10 > th dose independent sin 13 NA