Os02g0467400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0467400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.17 | 0.301 | 9.51 | 1.04 | 0.923 | -1.31 | -0.109 | 10.6 | -0.539 | 5.44 | 29.96 | 1406 | -- | -- |
| 46.63 | 0.32 | 9.72 | -0.923 | 0.953 | 0.647 | -0.0273 | -- | -0.523 | 5.51 | 33.77 | 2835 | -- | -- |
| 41.2 | 0.299 | 9.51 | 1.03 | 0.923 | -1.3 | -- | 10.5 | -0.533 | 5.45 | 29.88 | 1407 | -- | -- |
| 46.63 | 0.32 | 9.72 | -0.923 | 0.953 | 0.649 | -- | -- | -0.523 | 5.51 | 33.77 | 2835 | -- | -- |
| 74.69 | 0.403 | 9.6 | 0.512 | -- | -2.09 | -- | 13.2 | -0.417 | -- | 28.2 | 575 | -- | -- |
| 47.47 | 0.323 | 9.73 | -0.915 | 0.94 | -- | -0.0595 | -- | -0.527 | 5.54 | -- | -- | -- | -- |
| 47.48 | 0.323 | 9.73 | -0.915 | 0.939 | -- | -- | -- | -0.527 | 5.55 | -- | -- | -- | -- |
| 69.88 | 0.389 | 9.71 | -0.731 | -- | -0.905 | -- | -- | -0.386 | -- | 23.99 | 390 | -- | -- |
| 46.83 | 0.319 | 9.65 | -- | 0.945 | -0.768 | -- | -- | -0.195 | 5.49 | 7.086 | 47520 | -- | -- |
| 93.35 | 0.451 | 9.74 | -0.885 | -- | -- | -- | -- | -0.504 | -- | -- | -- | -- | -- |
| 69.57 | 0.39 | 9.7 | -- | 0.924 | -- | -- | -- | -0.425 | 5.59 | -- | -- | -- | -- |
| 80.73 | 0.418 | 9.68 | -- | -- | -1.32 | -- | -- | -0.246 | -- | 16.48 | 275 | -- | -- |
| 113.99 | 0.498 | 9.72 | -- | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 3 | 40.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 6 | 40.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 8 | 40.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 10 | 40.60 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 13 | 40.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 18 | 40.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 21 | 40.66 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 95 | 40.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 99 | 41.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 102 | 41.04 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 120 | 41.07 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 141 | 41.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 166 | 41.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 222 | 41.19 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 226 | 41.20 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 350 | 41.21 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 523 | 41.62 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 530 | 41.68 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 531 | 41.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 559 | 41.76 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 590 | 41.87 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 597 | 41.93 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 617 | 41.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 630 | 42.04 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 632 | 42.05 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 639 | 42.08 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 653 | 42.09 | wind | 7 | 14400 | > th | dose dependent | rect. | 4 | 8 |
| 662 | 42.12 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 682 | 42.16 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 12 |
| 706 | 42.19 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 22 |
| 727 | 42.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 728 | 42.24 | wind | 7 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 734 | 42.25 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 742 | 42.27 | wind | 7 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 764 | 42.28 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 23 | 22 |
| 773 | 42.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 780 | 42.32 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 793 | 42.33 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 800 | 42.34 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 816 | 42.35 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 23 |
| 818 | 42.36 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 827 | 42.37 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 833 | 42.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 835 | 42.38 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 840 | 42.39 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 846 | 42.40 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 862 | 42.42 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 866 | 42.42 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 20 |
| 877 | 42.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 896 | 42.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 904 | 42.45 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 908 | 42.46 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 979 | 42.53 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 985 | 42.54 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 990 | 42.54 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |