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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0467000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamate 4-hydroxylase CYP73.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0842) R2 : 0.249
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.61 (0.204) R2dC : 0.104 R2C : 0.0404
β3 : -2.43 (0.232) R2dE : 0.2 R2E : 0.0746
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.183) R2dN8 : 0.0693 R2N8 : -0.00573
σ : 1.57
deviance : 1130.27
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_____
C
peak time of C : 1.49
E
wheather : radiation
threshold : 20.16
memory length : 1397
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 20.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1116 1.57 4.35 0.352 1.56 -2.57 -0.498 2.85 1.12 1.52 20.14 1410 12.2 21.2
1132.19 1.57 4.36 -0.14 1.59 -2.45 -0.0453 -- 1.07 1.51 20.16 1396 12.4 21
1116.93 1.56 4.35 0.372 1.56 -2.6 -- 2.91 1.1 1.42 20.06 1402 12.2 21.1
1129.93 1.57 4.4 -0.0709 1.62 -2.44 -- -- 1.01 1.5 20.15 1397 12.4 20.7
1237.48 1.64 4.36 0.452 -- -2.59 -- 3.66 1.14 -- 20.15 1538 12.2 21.4
1374.9 1.74 4.56 -0.84 1.25 -- -0.718 -- 0.335 1.59 -- -- -- --
1376.96 1.74 4.56 -0.816 1.25 -- -- -- 0.339 1.59 -- -- -- --
1240.87 1.64 4.33 0.199 -- -2.76 -- -- 1.15 -- 20.16 1625 12.5 23
1130.27 1.57 4.4 -- 1.61 -2.43 -- -- 1.01 1.49 20.16 1397 12.4 20.7
1472.94 1.79 4.54 -0.766 -- -- -- -- 0.367 -- -- -- -- --
1394.5 1.75 4.54 -- 1.24 -- -- -- 0.43 1.57 -- -- -- --
1238.78 1.64 4.34 -- -- -2.74 -- -- 1.14 -- 20.13 1625 12.4 23.5
1488.4 1.8 4.53 -- -- -- -- -- 0.452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1122.45 radiation 20 1440 > th dose independent rect. 12 21
2 1125.67 wind 9 43200 > th dose dependent rect. 14 7
6 1127.02 wind 9 43200 > th dose independent rect. 14 4
8 1127.47 radiation 10 1440 < th dose dependent rect. 16 8
9 1127.54 radiation 10 1440 < th dose dependent rect. 16 5
13 1127.81 wind 9 43200 < th dose independent rect. 14 4
14 1127.83 wind 9 43200 > th dose dependent rect. 11 11
22 1128.36 radiation 10 1440 < th dose dependent rect. 16 11
25 1128.60 wind 9 43200 > th dose dependent rect. 14 4
27 1128.69 wind 9 43200 < th dose independent rect. 11 7
37 1129.64 radiation 30 1440 < th dose dependent sin 13 NA
39 1129.87 wind 9 43200 > th dose independent rect. 11 11
41 1130.29 wind 9 43200 < th dose independent rect. 11 11
42 1130.96 wind 9 43200 > th dose independent rect. 12 6
43 1131.11 wind 9 43200 > th dose independent rect. 14 8
47 1131.45 radiation 40 1440 < th dose dependent rect. 15 9
50 1131.60 radiation 40 1440 < th dose dependent rect. 15 6
58 1132.14 radiation 30 1440 < th dose independent rect. 15 18
65 1132.39 wind 9 43200 > th dose dependent rect. 12 6
75 1132.70 radiation 40 1440 < th dose dependent rect. 14 19
76 1132.71 radiation 40 1440 < th dose dependent rect. 15 12
83 1132.90 radiation 40 1440 < th dose dependent rect. 15 14
93 1133.44 radiation 20 1440 > th dose independent sin 13 NA
100 1133.62 radiation 20 1440 > th dose dependent rect. 15 17
126 1134.89 radiation 1 1440 > th dose dependent rect. 15 4
139 1134.96 radiation 1 1440 > th dose dependent sin 13 NA
159 1136.19 radiation 1 1440 > th dose dependent rect. 14 19
193 1137.42 wind 9 43200 < th dose independent rect. 14 8
212 1138.72 radiation 20 1440 > th dose independent rect. 15 23
262 1141.04 radiation 20 1440 > th dose independent rect. 7 10
283 1141.20 radiation 20 1440 > th dose independent no NA NA
382 1141.53 radiation 30 1440 < th dose independent sin 12 NA
397 1141.83 wind 9 43200 < th dose independent rect. 15 1
475 1143.68 radiation 10 1440 < th dose dependent rect. 8 22
500 1144.82 radiation 10 1440 < th dose dependent rect. 8 16
503 1144.89 radiation 10 1440 < th dose dependent rect. 8 13
510 1145.05 radiation 10 1440 < th dose dependent rect. 8 19
511 1145.06 radiation 10 1440 < th dose dependent rect. 8 11
537 1146.00 radiation 30 1440 < th dose dependent rect. 7 17
540 1146.04 radiation 30 1440 < th dose dependent rect. 7 15
550 1146.21 wind 7 43200 > th dose independent rect. 12 2
554 1146.22 radiation 30 1440 < th dose dependent rect. 7 20
555 1146.23 radiation 20 1440 > th dose independent sin 0 NA
599 1146.95 wind 7 4320 > th dose independent rect. 17 1
602 1146.98 radiation 1 14400 < th dose dependent rect. 4 1
610 1147.14 wind 9 43200 > th dose independent rect. 15 1
694 1148.19 radiation 10 1440 < th dose independent rect. 16 1
703 1148.25 radiation 40 1440 < th dose dependent rect. 2 22
710 1148.29 radiation 40 1440 < th dose dependent rect. 2 20
787 1148.57 radiation 40 1440 < th dose dependent rect. 23 22
789 1148.58 radiation 40 1440 < th dose dependent no NA NA
801 1148.60 radiation 40 1440 < th dose dependent rect. 20 23
852 1148.82 wind 7 4320 > th dose dependent rect. 17 1
889 1149.23 humidity 70 1440 < th dose independent rect. 17 22
926 1149.96 radiation 20 1440 > th dose dependent rect. 15 1
941 1150.33 temperature 20 14400 < th dose independent rect. 21 7
957 1150.45 wind 7 43200 > th dose dependent rect. 12 1
971 1150.84 humidity 70 1440 > th dose independent rect. 17 22
988 1151.19 temperature 25 720 > th dose dependent rect. 16 17