Os02g0466600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0466600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.56 | 0.242 | 8.16 | -0.444 | 0.61 | -0.272 | -0.38 | -1.05 | -0.122 | 12.1 | 7.04 | 32488 | -- | -- |
| 28.51 | 0.249 | 8.17 | -0.46 | 0.595 | -0.338 | -0.598 | -- | -0.132 | 12.1 | 8.668 | 33296 | -- | -- |
| 27.1 | 0.242 | 8.16 | -0.452 | 0.61 | -0.272 | -- | -1.03 | -0.126 | 12.2 | 6.617 | 32625 | -- | -- |
| 28.36 | 0.248 | 8.17 | -0.654 | 0.515 | -0.408 | -- | -- | -0.171 | 12.3 | 6.544 | 33365 | -- | -- |
| 34.26 | 0.274 | 8.17 | -0.602 | -- | -0.456 | -- | 0.306 | -0.107 | -- | 6.96 | 39249 | -- | -- |
| 32.25 | 0.266 | 8.16 | -0.585 | 0.597 | -- | -0.406 | -- | -0.0846 | 12.3 | -- | -- | -- | -- |
| 32.95 | 0.269 | 8.16 | -0.6 | 0.599 | -- | -- | -- | -0.0863 | 12.4 | -- | -- | -- | -- |
| 34.83 | 0.276 | 8.17 | -0.606 | -- | -0.455 | -- | -- | -0.107 | -- | 6.96 | 39249 | -- | -- |
| 36.34 | 0.281 | 8.18 | -- | 0.6 | -0.429 | -- | -- | -0.128 | 12.2 | 39.99 | 30209 | -- | -- |
| 55.48 | 0.348 | 8.17 | -0.62 | -- | -- | -- | -- | -0.096 | -- | -- | -- | -- | -- |
| 42.44 | 0.305 | 8.15 | -- | 0.607 | -- | -- | -- | -0.0195 | 12.4 | -- | -- | -- | -- |
| 44.51 | 0.312 | 8.16 | -- | -- | -0.46 | -- | -- | -0.0399 | -- | 6.96 | 39249 | -- | -- |
| 65.63 | 0.378 | 8.16 | -- | -- | -- | -- | -- | -0.0271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.68 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 4 | 26.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 9 | 26.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 21 | 26.78 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 74 | 26.85 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 95 | 26.87 | temperature | 30 | 43200 | < th | dose independent | sin | 8 | NA |
| 129 | 26.88 | temperature | 30 | 43200 | > th | dose independent | sin | 8 | NA |
| 141 | 26.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 146 | 26.91 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 152 | 26.91 | temperature | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 153 | 26.91 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 204 | 26.93 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 234 | 26.95 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 242 | 26.95 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 243 | 26.95 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 355 | 26.99 | temperature | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 457 | 27.04 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 517 | 27.05 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 520 | 27.05 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 556 | 27.06 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 628 | 27.06 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 671 | 27.07 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 672 | 27.07 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 677 | 27.07 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 860 | 27.09 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 942 | 27.11 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 7 |