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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0462800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 42 (Transcription factor WRKY02).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.76 (0.0419) R2 : 0.394
β1 : 1.8 (0.16) R2dD : 0.197 R2D : 0.0595
β2 : 0.589 (0.107) R2dC : 0.0409 R2C : 0.0625
β3 : -1.9 (0.145) R2dE : 0.281 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.147 (0.094) R2dN8 : 0.00508 R2N8 : -0.0261
σ : 0.77
deviance : 273.5
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 19.22
memory length : 1351
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.36 0.77 5.75 1.83 0.634 -1.83 -1.37 0.0578 0.16 15.7 19.71 1440 -- --
268.31 0.763 5.75 1.81 0.614 -1.86 -1.41 -- 0.158 15.7 19.5 1410 -- --
273.56 0.77 5.76 1.79 0.703 -1.84 -- 0.00313 0.143 16 19.6 1527 -- --
273.5 0.77 5.76 1.8 0.589 -1.9 -- -- 0.147 16.4 19.22 1351 -- --
289.92 0.793 5.75 1.84 -- -2.02 -- 0.184 0.143 -- 19.43 1259 -- --
370.22 0.902 5.85 1.13 0.755 -- -1.25 -- -0.277 15.6 -- -- -- --
374.79 0.907 5.85 1.11 0.755 -- -- -- -0.284 15.9 -- -- -- --
290.03 0.793 5.75 1.8 -- -2.02 -- -- 0.151 -- 19.34 1260 -- --
346.52 0.867 5.83 -- 0.555 -1.32 -- -- -0.165 16.6 21.16 1259 -- --
406.05 0.942 5.85 1.08 -- -- -- -- -0.304 -- -- -- -- --
407.2 0.944 5.88 -- 0.734 -- -- -- -0.408 15.9 -- -- -- --
363.52 0.888 5.82 -- -- -1.42 -- -- -0.157 -- 21.3 1238 -- --
436.7 0.975 5.88 -- -- -- -- -- -0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 261.46 temperature 30 30 < th dose dependent rect. 5 23
4 264.75 temperature 20 1440 > th dose dependent rect. 16 13
8 264.98 temperature 20 1440 > th dose dependent rect. 16 17
11 265.03 temperature 20 1440 > th dose dependent rect. 17 8
23 265.41 temperature 20 1440 > th dose dependent sin 13 NA
37 265.78 temperature 30 270 < th dose dependent rect. 13 22
46 266.12 temperature 10 720 > th dose dependent rect. 15 21
51 266.27 temperature 30 270 < th dose dependent rect. 15 19
58 266.38 temperature 30 90 < th dose dependent rect. 16 23
99 267.16 temperature 10 1440 > th dose dependent rect. 17 6
106 267.29 temperature 30 1440 < th dose dependent rect. 17 6
149 267.70 temperature 30 270 < th dose dependent rect. 9 23
214 268.16 temperature 30 90 < th dose dependent rect. 3 23
268 268.49 temperature 20 1440 > th dose dependent no NA NA
288 268.59 temperature 30 1440 < th dose dependent rect. 16 19
312 268.73 temperature 20 1440 > th dose dependent rect. 19 23
330 268.82 temperature 20 1440 > th dose dependent rect. 24 23
339 268.85 temperature 20 1440 > th dose dependent rect. 2 23
354 268.88 temperature 20 1440 > th dose dependent rect. 4 23
454 269.29 temperature 30 1440 < th dose dependent sin 15 NA
497 269.46 temperature 10 720 > th dose dependent rect. 8 19
511 269.51 temperature 30 720 < th dose dependent rect. 5 19
645 269.85 temperature 10 1440 > th dose dependent rect. 1 23
656 269.88 temperature 30 1440 < th dose dependent rect. 7 22
730 270.14 temperature 30 1440 < th dose dependent rect. 1 23
731 270.15 temperature 30 1440 < th dose dependent no NA NA
748 270.19 temperature 30 90 < th dose dependent no NA NA
772 270.24 temperature 30 1440 < th dose dependent rect. 10 23
799 270.32 temperature 25 1440 > th dose independent rect. 16 22
851 270.44 temperature 30 1440 < th dose dependent rect. 21 23
869 270.51 temperature 25 1440 > th dose independent rect. 6 21
949 270.72 temperature 25 1440 < th dose independent rect. 6 20
989 270.86 temperature 25 1440 < th dose independent rect. 16 22