Os02g0462500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0462500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.26 | 0.584 | 5.84 | 1.03 | 0.199 | 1.1 | 0.0888 | -2.35 | 0.144 | 17.7 | 24.6 | 11 | -- | -- |
| 156.67 | 0.587 | 5.8 | 1.32 | 0.227 | 0.902 | -0.233 | -- | 0.229 | 17 | 24.49 | 9 | -- | -- |
| 154.28 | 0.579 | 5.84 | 1.03 | 0.198 | 1.1 | -- | -2.32 | 0.145 | 17.7 | 24.6 | 11 | -- | -- |
| 156.8 | 0.587 | 5.8 | 1.32 | 0.227 | 0.901 | -- | -- | 0.228 | 17.2 | 24.49 | 10 | -- | -- |
| 155.92 | 0.582 | 5.84 | 1 | -- | 1.22 | -- | -2.29 | 0.125 | -- | 24.53 | 12 | -- | -- |
| 168.95 | 0.609 | 5.78 | 1.46 | 0.552 | -- | 0.00241 | -- | 0.319 | 15.8 | -- | -- | -- | -- |
| 168.95 | 0.609 | 5.78 | 1.46 | 0.552 | -- | -- | -- | 0.319 | 15.8 | -- | -- | -- | -- |
| 158.72 | 0.587 | 5.8 | 1.28 | -- | 1.05 | -- | -- | 0.204 | -- | 24.5 | 12 | -- | -- |
| 200.16 | 0.659 | 5.85 | -- | 0.128 | 1.23 | -- | -- | 0.0165 | 20.3 | 23.7 | 12 | -- | -- |
| 185.75 | 0.637 | 5.78 | 1.43 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 224.91 | 0.702 | 5.82 | -- | 0.523 | -- | -- | -- | 0.157 | 15.8 | -- | -- | -- | -- |
| 201.06 | 0.66 | 5.85 | -- | -- | 1.23 | -- | -- | 0.0166 | -- | 23.78 | 12 | -- | -- |
| 240.01 | 0.723 | 5.82 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.38 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 2 | 144.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 3 | 145.15 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 10 | 146.01 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 12 | 146.39 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 18 | 146.85 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 23 | 147.23 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 26 | 147.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 33 | 147.79 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 34 | 147.79 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 20 |
| 47 | 148.20 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 52 | 148.39 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 54 | 148.39 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 62 | 148.45 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 65 | 148.45 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 69 | 148.45 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 71 | 148.45 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 76 | 148.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 77 | 148.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 78 | 148.45 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 79 | 148.45 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 84 | 148.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 86 | 148.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 87 | 148.52 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 95 | 148.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 99 | 148.65 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 100 | 148.66 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 101 | 148.66 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 126 | 149.13 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 127 | 149.13 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 132 | 149.27 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 146 | 149.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 192 | 150.09 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 200 | 150.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 215 | 150.48 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 217 | 150.49 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 224 | 150.58 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 249 | 150.81 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 250 | 150.81 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 253 | 150.81 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 257 | 150.81 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 266 | 150.81 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 267 | 150.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 287 | 150.81 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 297 | 150.83 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 309 | 151.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 333 | 151.26 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 337 | 151.29 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 398 | 151.75 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 402 | 151.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 422 | 151.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 455 | 152.15 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 481 | 152.38 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 577 | 152.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 583 | 153.00 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 586 | 153.01 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 589 | 153.01 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 596 | 153.04 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 632 | 153.11 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 635 | 153.12 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 637 | 153.15 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 652 | 153.28 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 654 | 153.30 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 657 | 153.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 13 |
| 662 | 153.33 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 675 | 153.38 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 679 | 153.39 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 697 | 153.47 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 718 | 153.55 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 755 | 153.71 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 784 | 153.80 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 807 | 153.86 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 810 | 153.87 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 811 | 153.87 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 815 | 153.87 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 819 | 153.89 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 823 | 153.90 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 831 | 153.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 20 |
| 832 | 153.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 834 | 153.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 836 | 153.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 850 | 153.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 853 | 153.98 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 854 | 153.98 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 855 | 153.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 874 | 154.05 | wind | 5.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 916 | 154.15 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 925 | 154.17 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 926 | 154.17 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 927 | 154.18 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 933 | 154.19 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 935 | 154.19 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 945 | 154.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 948 | 154.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 950 | 154.24 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 961 | 154.26 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 20 |
| 979 | 154.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 980 | 154.31 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 988 | 154.33 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 990 | 154.33 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 991 | 154.33 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 993 | 154.33 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 994 | 154.33 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 4 |
| 999 | 154.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 4 |
| 1000 | 154.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 4 |