Os02g0462300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease I family protein.
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Os02g0462300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.28 | 0.343 | 11 | -0.315 | 0.298 | -0.974 | 0.709 | 10.7 | -0.581 | 2.26 | 29.91 | 1390 | -- | -- |
| 58.91 | 0.357 | 11.3 | -2.34 | 0.291 | 0.29 | 0.868 | -- | -0.712 | 1.77 | 31.19 | 35011 | -- | -- |
| 54.87 | 0.345 | 11 | -0.35 | 0.293 | -0.931 | -- | 10.6 | -0.533 | 2.31 | 29.41 | 1282 | -- | -- |
| 58.35 | 0.356 | 11.3 | -2.33 | 0.302 | 0.475 | -- | -- | -0.807 | 3.61 | 33.79 | 16853 | -- | -- |
| 59.78 | 0.36 | 11 | -0.311 | -- | -0.928 | -- | 11.1 | -0.52 | -- | 29.46 | 1233 | -- | -- |
| 61.87 | 0.369 | 11.3 | -2.18 | 0.334 | -- | 0.826 | -- | -0.641 | 2.51 | -- | -- | -- | -- |
| 64.32 | 0.376 | 11.3 | -2.21 | 0.337 | -- | -- | -- | -0.646 | 2.56 | -- | -- | -- | -- |
| 63.42 | 0.371 | 11.3 | -2.38 | -- | 0.553 | -- | -- | -0.842 | -- | 33.54 | 16993 | -- | -- |
| 126.55 | 0.524 | 11.2 | -- | 0.299 | -1.06 | -- | -- | -0.513 | 2.32 | 35.34 | 47520 | -- | -- |
| 70.96 | 0.394 | 11.3 | -2.19 | -- | -- | -- | -- | -0.638 | -- | -- | -- | -- | -- |
| 192.57 | 0.649 | 11.2 | -- | 0.294 | -- | -- | -- | -0.401 | 2.45 | -- | -- | -- | -- |
| 131.84 | 0.535 | 11.2 | -- | -- | -1.05 | -- | -- | -0.519 | -- | 35.36 | 47520 | -- | -- |
| 197.66 | 0.656 | 11.2 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 17 | 52.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 18 | 52.43 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 22 | 52.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 23 | 52.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 24 | 52.55 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 26 | 52.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 27 | 52.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 28 | 52.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 37 | 52.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 41 | 52.64 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 110 | 52.82 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 12 | 20 |
| 145 | 52.88 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 191 | 52.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 192 | 52.95 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 16 |
| 223 | 52.98 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 275 | 53.06 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 9 | NA |
| 280 | 53.07 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 18 | 15 |
| 285 | 53.08 | temperature | 30 | 1440 | > th | dose dependent | sin | 6 | NA |
| 411 | 53.24 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 485 | 53.30 | atmosphere | 1000 | 270 | < th | dose independent | sin | 14 | NA |
| 505 | 53.30 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 600 | 53.37 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 723 | 53.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 12 |
| 802 | 53.47 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 23 |
| 837 | 53.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 840 | 53.52 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 906 | 53.55 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 17 |
| 928 | 53.56 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |