Os02g0462000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0462000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.39 | 0.534 | 5.96 | -2.4 | 1.22 | 1.34 | 1.12 | -1.19 | 0.467 | 22.7 | 19.91 | 777 | -- | -- |
| 130.25 | 0.532 | 5.93 | -2.14 | 1.25 | 1.24 | 0.895 | -- | 0.549 | 22.4 | 20.13 | 861 | -- | -- |
| 133.38 | 0.538 | 5.95 | -2.25 | 1.3 | 1.2 | -- | -0.28 | 0.506 | 22.2 | 20.72 | 967 | -- | -- |
| 133.38 | 0.538 | 5.93 | -2.17 | 1.28 | 1.19 | -- | -- | 0.543 | 22.1 | 20.6 | 951 | -- | -- |
| 209.97 | 0.675 | 5.96 | -2.64 | -- | 2.02 | -- | -1.46 | 0.36 | -- | 21.68 | 807 | -- | -- |
| 163.04 | 0.599 | 5.89 | -1.77 | 1.57 | -- | 1.07 | -- | 0.779 | 22.3 | -- | -- | -- | -- |
| 167.64 | 0.606 | 5.89 | -1.81 | 1.57 | -- | -- | -- | 0.776 | 22.2 | -- | -- | -- | -- |
| 211.03 | 0.677 | 5.93 | -2.33 | -- | 1.97 | -- | -- | 0.421 | -- | 21.09 | 806 | -- | -- |
| 245.34 | 0.73 | 5.86 | -- | 1.4 | 0.571 | -- | -- | 0.894 | 22.2 | 22.16 | 931 | -- | -- |
| 316.87 | 0.832 | 5.85 | -1.79 | -- | -- | -- | -- | 0.78 | -- | -- | -- | -- | -- |
| 254.15 | 0.746 | 5.84 | -- | 1.56 | -- | -- | -- | 0.978 | 22.1 | -- | -- | -- | -- |
| 339.03 | 0.858 | 5.83 | -- | -- | 1.44 | -- | -- | 0.865 | -- | 24.3 | 807 | -- | -- |
| 401.27 | 0.935 | 5.8 | -- | -- | -- | -- | -- | 0.978 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.13 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 5 | 123.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 6 | 123.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 13 | 124.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 18 |
| 28 | 124.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 33 | 124.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 58 | 125.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 74 | 125.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 76 | 125.33 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 452 | 128.95 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 3 |
| 516 | 129.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 540 | 129.70 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 570 | 129.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 573 | 129.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 15 |
| 577 | 129.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 12 |
| 615 | 130.12 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 625 | 130.16 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 633 | 130.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 650 | 130.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 651 | 130.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 666 | 130.23 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 733 | 130.33 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 888 | 130.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 908 | 130.60 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 938 | 130.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |