FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0459600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Legume lectin, beta domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.047) R2 : 0.25
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.923 (0.131) R2dC : 0.0946 R2C : 0.162
β3 : 1.27 (0.188) R2dE : 0.0899 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0486 (0.1) R2dN8 : 0.000521 R2N8 : -0.00232
σ : 0.878
deviance : 355.02
__
_____
C
peak time of C : 17.2
E
wheather : temperature
threshold : 31.21
memory length : 600
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.65 0.88 3.32 0.753 0.945 0.148 -0.599 10.5 0.0574 17.1 30.4 665 -- --
356.22 0.879 3.39 -0.0086 0.88 1.11 -0.483 -- 0.128 17.1 31.3 601 -- --
351.53 0.873 3.32 0.748 0.951 0.128 -- 10.4 0.0519 17.1 30.39 664 -- --
354.35 0.877 3.43 -0.161 0.91 1.28 -- -- 0.0373 17.2 31.2 594 -- --
389.56 0.919 3.32 0.57 -- 0.673 -- 10.9 0.0542 -- 30.3 558 -- --
389.08 0.925 3.47 -0.00593 1.27 -- 0.283 -- -0.077 17.6 -- -- -- --
389.28 0.924 3.47 -0.00705 1.27 -- -- -- -0.0757 17.6 -- -- -- --
372.32 0.899 3.47 -0.308 -- 1.64 -- -- -0.219 -- 29 485 -- --
355.02 0.878 3.43 -- 0.923 1.27 -- -- 0.0486 17.2 31.21 600 -- --
472.79 1.02 3.45 -0.0482 -- -- -- -- -0.106 -- -- -- -- --
389.28 0.923 3.47 -- 1.27 -- -- -- -0.0749 17.6 -- -- -- --
374.49 0.901 3.47 -- -- 1.62 -- -- -0.199 -- 28.9 488 -- --
472.85 1.01 3.45 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.25 radiation 30 720 > th dose dependent rect. 14 21
2 348.27 radiation 10 720 > th dose dependent rect. 14 21
3 348.28 temperature 30 720 < th dose independent rect. 3 15
6 349.04 temperature 30 720 < th dose independent rect. 1 23
7 349.51 temperature 30 720 < th dose independent rect. 6 9
8 349.55 temperature 30 720 < th dose independent rect. 11 23
12 349.75 humidity 70 270 < th dose independent sin 16 NA
16 349.96 radiation 30 720 > th dose dependent sin 12 NA
20 350.26 temperature 30 720 > th dose independent rect. 8 9
54 350.53 humidity 80 270 < th dose dependent rect. 16 16
74 350.97 temperature 30 720 < th dose independent rect. 5 12
78 351.06 temperature 30 720 > th dose independent sin 1 NA
82 351.14 humidity 80 270 < th dose dependent sin 13 NA
83 351.17 temperature 30 720 < th dose independent rect. 2 21
87 351.25 temperature 30 720 < th dose independent sin 1 NA
90 351.27 radiation 30 720 > th dose independent rect. 14 19
97 351.39 radiation 20 720 > th dose independent rect. 14 21
109 351.68 temperature 30 720 > th dose independent rect. 14 22
117 351.75 radiation 30 720 > th dose independent sin 12 NA
120 351.76 humidity 80 270 < th dose dependent rect. 16 4
130 352.05 temperature 30 720 > th dose independent no NA NA
223 352.07 humidity 70 270 < th dose independent rect. 15 5
245 352.23 temperature 30 720 < th dose independent rect. 9 23
246 352.23 temperature 25 270 > th dose dependent rect. 15 5
251 352.28 humidity 80 270 < th dose dependent rect. 16 6
255 352.33 temperature 30 720 < th dose independent no NA NA
256 352.33 temperature 30 720 > th dose independent rect. 11 23
260 352.37 temperature 30 270 > th dose independent rect. 16 2
261 352.37 temperature 30 720 < th dose independent rect. 2 19
265 352.39 temperature 30 270 > th dose independent sin 12 NA
297 352.46 temperature 30 270 > th dose independent rect. 15 18
300 352.48 temperature 30 720 < th dose independent rect. 19 23
301 352.49 temperature 30 270 < th dose independent sin 13 NA
315 352.65 atmosphere 1005 270 < th dose independent rect. 16 2
317 352.66 radiation 20 720 > th dose independent rect. 8 1
332 352.90 temperature 25 270 > th dose dependent rect. 16 2
337 352.98 radiation 10 720 > th dose dependent rect. 8 1
346 353.04 humidity 70 270 > th dose independent rect. 10 13
349 353.16 temperature 30 270 > th dose independent rect. 15 4
369 353.25 temperature 25 270 > th dose dependent rect. 15 11
370 353.29 humidity 70 270 > th dose independent sin 15 NA
372 353.30 humidity 50 720 > th dose dependent rect. 2 22
398 353.39 temperature 25 270 > th dose dependent rect. 15 16
406 353.50 radiation 20 270 > th dose independent rect. 16 15
420 353.62 temperature 25 270 > th dose dependent sin 16 NA
440 353.75 humidity 70 270 < th dose independent rect. 16 2
450 353.88 radiation 20 270 > th dose independent rect. 16 1
482 353.94 temperature 30 720 < th dose independent rect. 19 17
504 354.09 radiation 40 720 > th dose dependent rect. 10 1
531 354.31 temperature 30 720 < th dose independent rect. 9 6
543 354.40 temperature 25 270 > th dose dependent rect. 12 8
544 354.41 radiation 1 270 > th dose dependent rect. 17 2
557 354.45 temperature 30 270 > th dose dependent sin 11 NA
558 354.45 humidity 50 270 > th dose dependent rect. 10 13
620 354.67 radiation 10 720 > th dose dependent rect. 8 23
622 354.73 radiation 10 720 > th dose dependent rect. 8 10
639 354.76 temperature 30 720 > th dose dependent rect. 8 8
675 354.87 radiation 40 720 < th dose dependent rect. 15 17
676 354.87 radiation 40 720 < th dose dependent rect. 2 23
687 354.94 radiation 10 720 > th dose dependent no NA NA
688 354.94 radiation 10 720 > th dose dependent rect. 6 12
802 355.00 radiation 40 720 < th dose independent sin 12 NA
808 355.04 radiation 10 720 > th dose dependent sin 3 NA
812 355.07 radiation 10 270 > th dose dependent rect. 16 15
831 355.13 temperature 30 720 > th dose dependent rect. 13 3
849 355.17 temperature 30 720 > th dose dependent rect. 14 1
872 355.23 temperature 30 720 < th dose independent rect. 6 23
922 355.29 temperature 25 270 > th dose dependent rect. 12 19