Os02g0457600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0457600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.09 | 0.623 | 2.99 | 0.0774 | 0.0338 | 16.1 | -0.539 | 31 | -0.00672 | 11.6 | 1 | 90 | 14 | 1 |
| 197.58 | 0.655 | 2.93 | 0.149 | 0.0742 | 7.67 | 2.27 | -- | 0.0628 | 18.6 | 1.535 | 93 | 13.8 | 1.31 |
| 180.3 | 0.625 | 3 | 0.0583 | 0.0478 | 16.2 | -- | 31 | -0.00925 | 8.92 | 0.979 | 95 | 14 | 0.95 |
| 181.25 | 0.627 | 2.95 | 0.024 | 0.0436 | 6.12 | -- | -- | 0.0401 | 5.05 | 1.46 | 91 | 14 | 1.34 |
| 180.43 | 0.626 | 3 | 0.0583 | -- | 16.2 | -- | 31.1 | -0.00889 | -- | 0.9769 | 95 | 14 | 0.948 |
| 212.29 | 0.683 | 2.97 | -0.0853 | 0.058 | -- | -0.73 | -- | -0.0304 | 13.9 | -- | -- | -- | -- |
| 214.34 | 0.686 | 2.97 | -0.108 | 0.0575 | -- | -- | -- | -0.0348 | 13.3 | -- | -- | -- | -- |
| 180.56 | 0.626 | 2.97 | -0.0312 | -- | 5.85 | -- | -- | -0.0108 | -- | 1.602 | 165 | 14.5 | 0.0184 |
| 180.51 | 0.626 | 2.97 | -- | 0.0175 | 5.87 | -- | -- | -0.00209 | 4.5 | 1.252 | 93 | 14 | 1.24 |
| 214.55 | 0.684 | 2.97 | -0.11 | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
| 214.65 | 0.685 | 2.97 | -- | 0.0593 | -- | -- | -- | -0.0228 | 13.3 | -- | -- | -- | -- |
| 180.47 | 0.626 | 2.97 | -- | -- | 5.84 | -- | -- | -0.0062 | -- | 0.816 | 147 | 14.5 | 0.241 |
| 214.87 | 0.684 | 2.97 | -- | -- | -- | -- | -- | -0.0237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.09 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 179.09 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 26 | 191.47 | wind | 7 | 30 | > th | dose dependent | rect. | 12 | 2 |
| 28 | 191.50 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 68 | 192.29 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 96 | 194.00 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 7 |
| 166 | 196.14 | wind | 7 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 169 | 196.24 | radiation | 20 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 184 | 196.89 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 1 |
| 187 | 196.92 | humidity | 80 | 90 | > th | dose independent | rect. | 15 | 1 |
| 207 | 197.45 | radiation | 1 | 30 | < th | dose dependent | rect. | 6 | 11 |
| 215 | 197.66 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 1 |
| 233 | 198.00 | humidity | 80 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 235 | 198.02 | humidity | 80 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 242 | 198.16 | wind | 7 | 30 | > th | dose independent | rect. | 18 | 3 |
| 244 | 198.20 | humidity | 90 | 270 | > th | dose independent | rect. | 11 | 2 |
| 259 | 198.49 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 11 |
| 324 | 199.26 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 9 |
| 383 | 199.72 | wind | 7 | 90 | > th | dose independent | rect. | 12 | 14 |
| 396 | 199.90 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 7 |
| 404 | 199.98 | humidity | 80 | 10 | > th | dose independent | rect. | 15 | 1 |
| 424 | 200.11 | wind | 7 | 90 | > th | dose independent | rect. | 12 | 10 |
| 451 | 200.65 | temperature | 25 | 30 | > th | dose independent | rect. | 24 | 3 |
| 456 | 200.66 | wind | 9 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 460 | 200.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 485 | 201.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 7 |
| 488 | 201.07 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 21 |
| 504 | 201.28 | humidity | 90 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 530 | 201.48 | humidity | 90 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 555 | 201.62 | wind | 7 | 30 | > th | dose independent | rect. | 19 | 8 |
| 561 | 201.70 | humidity | 90 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 575 | 201.78 | humidity | 90 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 601 | 201.95 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 668 | 202.24 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 1 |
| 704 | 202.43 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 718 | 202.43 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 785 | 202.74 | humidity | 90 | 4320 | < th | dose independent | sin | 8 | NA |
| 798 | 202.79 | temperature | 30 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 801 | 202.80 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 18 |
| 807 | 202.82 | wind | 5 | 90 | > th | dose dependent | rect. | 12 | 14 |
| 817 | 202.89 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 826 | 202.92 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 841 | 202.97 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 16 |
| 884 | 203.08 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 886 | 203.09 | humidity | 90 | 4320 | > th | dose independent | sin | 7 | NA |
| 957 | 203.27 | wind | 7 | 10 | > th | dose dependent | rect. | 16 | 1 |