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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0456000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : COG4 transport domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0251) R2 : 0.00913
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.0528) R2dN8 : 0.0118 R2N8 : 0.00913
σ : 0.473
deviance : 102.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.59 0.445 3.36 0.285 0.00254 0.779 0.775 0.408 0.0251 14.6 1006 257 -- --
89.84 0.441 3.36 0.301 0.00101 0.76 -0.793 -- 0.0211 2.49 1006 280 -- --
91.68 0.446 3.36 0.297 0.00811 0.761 -- 0.512 0.033 14.5 1006 244 -- --
92.08 0.447 3.36 0.317 0.00606 0.742 -- -- 0.0295 14.5 1006 241 -- --
91.69 0.446 3.36 0.298 -- 0.762 -- 0.51 0.0326 -- 1006 244 -- --
98.6 0.466 3.33 0.265 0.032 -- 0.695 -- 0.136 14.6 -- -- -- --
100.21 0.469 3.33 0.283 0.0536 -- -- -- 0.14 10.8 -- -- -- --
92.08 0.447 3.36 0.317 -- 0.742 -- -- 0.0295 -- 1006 241 -- --
94.71 0.453 3.36 -- 0.00432 0.715 -- -- -0.00314 14.5 1006 230 -- --
100.39 0.468 3.33 0.282 -- -- -- -- 0.14 -- -- -- -- --
102.32 0.473 3.34 -- 0.0517 -- -- -- 0.108 10.4 -- -- -- --
94.72 0.453 3.36 -- -- 0.716 -- -- -0.00305 -- 1006 230 -- --
102.48 0.473 3.34 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.88 atmosphere 1005 10 > th dose dependent rect. 23 19
25 88.90 atmosphere 1005 270 > th dose dependent rect. 19 21
34 88.97 temperature 25 10 < th dose dependent rect. 8 17
39 89.02 atmosphere 1010 720 < th dose independent rect. 9 20
41 89.06 temperature 25 90 < th dose dependent rect. 8 16
82 89.45 atmosphere 1005 10 > th dose dependent rect. 23 14
101 89.57 atmosphere 1005 270 > th dose dependent rect. 10 23
104 89.59 atmosphere 1005 270 > th dose dependent rect. 2 22
119 89.71 atmosphere 1005 270 > th dose dependent rect. 4 20
120 89.71 atmosphere 1005 270 > th dose dependent rect. 4 23
125 89.74 atmosphere 1010 720 < th dose independent rect. 13 16
136 89.83 atmosphere 1010 720 > th dose independent rect. 10 18
142 89.86 atmosphere 1010 30 > th dose independent sin 17 NA
144 89.86 atmosphere 1005 270 > th dose dependent no NA NA
173 89.96 atmosphere 1005 270 > th dose dependent rect. 8 23
188 90.02 temperature 25 10 < th dose dependent rect. 24 1
190 90.02 temperature 25 10 < th dose dependent rect. 22 3
201 90.04 atmosphere 1005 270 > th dose dependent rect. 13 23
213 90.08 atmosphere 1010 720 > th dose independent sin 21 NA
231 90.14 temperature 20 10 < th dose independent rect. 23 1
242 90.17 atmosphere 1010 270 > th dose independent rect. 11 10
255 90.19 atmosphere 1010 720 < th dose independent sin 15 NA
263 90.20 atmosphere 1010 720 > th dose independent rect. 9 11
277 90.22 atmosphere 1010 720 < th dose independent rect. 9 12
300 90.27 atmosphere 1010 720 > th dose independent rect. 10 7
319 90.31 atmosphere 1010 720 > th dose independent rect. 11 4
370 90.42 atmosphere 1010 720 > th dose independent sin 14 NA
397 90.44 atmosphere 1005 10 > th dose dependent rect. 11 23
425 90.51 atmosphere 1010 720 < th dose independent rect. 23 22
487 90.57 temperature 30 30 < th dose dependent rect. 22 20
489 90.58 atmosphere 1010 720 < th dose independent rect. 17 11
496 90.59 atmosphere 1010 1440 < th dose independent rect. 19 1
510 90.61 atmosphere 1005 10 > th dose dependent no NA NA
544 90.67 atmosphere 1010 1440 > th dose independent rect. 19 1
555 90.68 atmosphere 1005 10 > th dose dependent rect. 14 23
576 90.70 atmosphere 1010 270 > th dose dependent rect. 10 11
615 90.73 temperature 30 30 < th dose dependent rect. 22 15
633 90.75 atmosphere 1010 1440 < th dose independent rect. 11 10
636 90.75 atmosphere 1010 270 > th dose dependent rect. 9 13
666 90.78 atmosphere 1010 720 < th dose independent no NA NA
673 90.78 atmosphere 1010 720 > th dose dependent rect. 6 15
712 90.82 atmosphere 1010 720 < th dose independent rect. 3 23
716 90.82 atmosphere 1005 10 > th dose dependent rect. 16 23
742 90.86 atmosphere 1005 270 > th dose dependent sin 9 NA
749 90.87 atmosphere 1010 720 > th dose dependent rect. 11 3
766 90.89 atmosphere 1010 720 > th dose dependent sin 23 NA
811 90.94 atmosphere 1010 720 > th dose dependent rect. 10 6
817 90.95 atmosphere 1010 720 > th dose independent no NA NA
853 90.99 atmosphere 1010 720 > th dose dependent rect. 9 9
891 91.02 atmosphere 1010 270 > th dose dependent sin 20 NA
920 91.05 atmosphere 1010 720 < th dose independent rect. 13 23
929 91.07 atmosphere 1010 10 < th dose independent sin 17 NA
940 91.07 atmosphere 1005 720 > th dose dependent sin 13 NA
954 91.09 atmosphere 1010 1440 < th dose independent rect. 11 4
955 91.09 atmosphere 1010 1440 < th dose independent rect. 15 6