Os02g0455400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1442 family protein.
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Os02g0455400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1442 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.01 | 0.42 | 10 | 0.639 | 0.225 | 0.507 | -0.372 | 1.78 | 0.0722 | 2.57 | 1001 | 6778 | -- | -- |
| 81.89 | 0.421 | 10 | 0.738 | 0.223 | 0.739 | -0.334 | -- | 0.0625 | 2.59 | 999.8 | 5375 | -- | -- |
| 80.49 | 0.418 | 10 | 0.648 | 0.224 | 0.511 | -- | 1.77 | 0.074 | 2.34 | 1001 | 6779 | -- | -- |
| 82.27 | 0.422 | 10 | 0.745 | 0.221 | 0.739 | -- | -- | 0.0656 | 2.33 | 999.6 | 5401 | -- | -- |
| 83.34 | 0.425 | 10 | 0.649 | -- | 0.464 | -- | 1.87 | 0.0818 | -- | 1001 | 7181 | -- | -- |
| 97.25 | 0.462 | 10 | 0.601 | 0.228 | -- | -0.386 | -- | 0.135 | 2.56 | -- | -- | -- | -- |
| 97.77 | 0.463 | 10 | 0.611 | 0.226 | -- | -- | -- | 0.138 | 2.3 | -- | -- | -- | -- |
| 85.16 | 0.43 | 10 | 0.754 | -- | 0.738 | -- | -- | 0.07 | -- | 999.6 | 5521 | -- | -- |
| 96.43 | 0.457 | 10 | -- | 0.235 | 0.606 | -- | -- | -0.00276 | 2.37 | 999.9 | 5580 | -- | -- |
| 100.8 | 0.469 | 9.99 | 0.621 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 107.61 | 0.485 | 10 | -- | 0.238 | -- | -- | -- | 0.0696 | 2.34 | -- | -- | -- | -- |
| 99.7 | 0.465 | 10 | -- | -- | 0.61 | -- | -- | -0.000159 | -- | 999.9 | 5603 | -- | -- |
| 110.96 | 0.492 | 10 | -- | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.79 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 2 | 72.07 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 4 | 74.05 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 5 | 74.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 9 | 74.35 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 10 | 74.46 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 11 | 74.60 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 15 | 74.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 17 | 75.04 | radiation | 10 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 19 | 75.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 24 | 75.65 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 27 | 75.86 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 30 | 75.98 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 31 | 76.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 34 | 76.06 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 35 | 76.07 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 37 | 76.14 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 43 | 76.23 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 44 | 76.25 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 46 | 76.26 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 59 | 76.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 62 | 76.31 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 63 | 76.31 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 69 | 76.33 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 113 | 76.52 | radiation | 10 | 43200 | > th | dose independent | sin | 2 | NA |
| 114 | 76.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 117 | 76.56 | humidity | 70 | 43200 | > th | dose independent | sin | 19 | NA |
| 138 | 76.57 | humidity | 90 | 43200 | < th | dose dependent | rect. | 9 | 15 |
| 186 | 76.73 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 194 | 76.76 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 196 | 76.76 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 229 | 76.82 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 234 | 76.83 | humidity | 90 | 43200 | < th | dose dependent | sin | 19 | NA |
| 235 | 76.83 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 249 | 76.85 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 250 | 76.85 | wind | 5 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 262 | 76.87 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 267 | 76.88 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 367 | 76.88 | humidity | 80 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 410 | 76.94 | humidity | 70 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 413 | 76.95 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 469 | 77.00 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 481 | 77.01 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 487 | 77.02 | humidity | 90 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 489 | 77.03 | humidity | 70 | 43200 | > th | dose independent | no | NA | NA |
| 490 | 77.03 | humidity | 70 | 43200 | < th | dose independent | sin | 17 | NA |
| 500 | 77.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 503 | 77.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 504 | 77.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 510 | 77.04 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 18 |
| 513 | 77.05 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 612 | 77.15 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 682 | 77.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 693 | 77.22 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 729 | 77.25 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 22 |
| 778 | 77.28 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 821 | 77.29 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 836 | 77.31 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 841 | 77.31 | humidity | 70 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 903 | 77.35 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 928 | 77.37 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 956 | 77.39 | humidity | 90 | 43200 | < th | dose dependent | no | NA | NA |
| 962 | 77.40 | humidity | 70 | 43200 | < th | dose independent | no | NA | NA |
| 967 | 77.40 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 989 | 77.41 | humidity | 90 | 43200 | < th | dose dependent | rect. | 13 | 23 |