Os02g0453800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0453800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.57 | 0.356 | 7.54 | -0.239 | 0.156 | -1.01 | -0.995 | -0.752 | 0.216 | 11.5 | 24.8 | 2 | -- | -- |
| 58.29 | 0.358 | 7.56 | -0.355 | 0.165 | -0.947 | -0.767 | -- | 0.187 | 11 | 25 | 2 | -- | -- |
| 60.78 | 0.366 | 7.56 | -0.389 | 0.169 | -0.953 | -- | 0.00479 | 0.182 | 10.7 | 25 | 2 | -- | -- |
| 60.78 | 0.365 | 7.56 | -0.389 | 0.169 | -0.953 | -- | -- | 0.182 | 10.7 | 25 | 2 | -- | -- |
| 62.3 | 0.37 | 7.57 | -0.407 | -- | -1.03 | -- | 0.000328 | 0.151 | -- | 25.6 | 2 | -- | -- |
| 71.9 | 0.398 | 7.51 | -0.137 | 0.338 | -- | -0.754 | -- | 0.371 | 11.9 | -- | -- | -- | -- |
| 74.36 | 0.404 | 7.51 | -0.166 | 0.341 | -- | -- | -- | 0.368 | 12.1 | -- | -- | -- | -- |
| 62.3 | 0.369 | 7.57 | -0.406 | -- | -1.03 | -- | -- | 0.151 | -- | 25.6 | 2 | -- | -- |
| 64.38 | 0.376 | 7.54 | -- | 0.188 | -0.804 | -- | -- | 0.238 | 10.8 | 25.6 | 2 | -- | -- |
| 81.68 | 0.422 | 7.52 | -0.177 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 75.09 | 0.405 | 7.51 | -- | 0.343 | -- | -- | -- | 0.387 | 12.1 | -- | -- | -- | -- |
| 66.36 | 0.381 | 7.55 | -- | -- | -0.908 | -- | -- | 0.219 | -- | 25.6 | 2 | -- | -- |
| 82.5 | 0.424 | 7.52 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.67 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 20 |
| 12 | 56.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 14 | 56.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 71 | 57.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 74 | 57.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 80 | 57.81 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 82 | 57.84 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 84 | 57.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 85 | 57.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 88 | 57.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 96 | 57.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 110 | 58.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 133 | 58.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 179 | 58.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 239 | 59.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 331 | 59.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 381 | 59.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 394 | 60.01 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 574 | 60.88 | temperature | 25 | 30 | < th | dose dependent | sin | 13 | NA |
| 577 | 60.90 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 583 | 60.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 594 | 60.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 597 | 60.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 618 | 61.06 | temperature | 10 | 90 | > th | dose dependent | sin | 11 | NA |
| 664 | 61.18 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 12 |
| 682 | 61.25 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 5 |
| 702 | 61.32 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 715 | 61.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 731 | 61.43 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 735 | 61.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 799 | 61.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 802 | 61.58 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 902 | 61.80 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |