Os02g0453600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CB (Fragment).
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Os02g0453600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CB (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.15 | 0.451 | 2.73 | 1.73 | 0.154 | -115 | -0.544 | 736 | 0.13 | 5.04 | 2 | 3 | 20 | 2 |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 123.62 | 0.521 | 3.01 | 0.0171 | 0.14 | -- | -0.583 | -- | 0.117 | 4.87 | -- | -- | -- | -- |
| 124.41 | 0.522 | 3.01 | 0.0183 | 0.139 | -- | -- | -- | 0.12 | 3.84 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 125.47 | 0.523 | 3.01 | 0.024 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 124.42 | 0.522 | 3.01 | -- | 0.139 | -- | -- | -- | 0.118 | 3.84 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 125.49 | 0.523 | 3.01 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.15 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 2 |
| 2 | 92.16 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 20 | 1 |
| 3 | 92.16 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 1 |
| 13 | 92.16 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 28 | 98.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 48 | 104.58 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 18 | 4 |
| 64 | 107.23 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 5 |
| 150 | 110.71 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 151 | 110.74 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 1 |
| 181 | 111.33 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 3 |
| 182 | 111.35 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 196 | 111.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 200 | 112.01 | wind | 3 | 10 | > th | dose independent | rect. | 21 | 1 |
| 205 | 112.17 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 216 | 112.41 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 5 |
| 223 | 112.49 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 234 | 112.63 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 252 | 112.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 264 | 113.09 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 287 | 113.09 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 366 | 113.38 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 372 | 113.47 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 373 | 113.51 | atmosphere | 995 | 1440 | > th | dose independent | sin | 9 | NA |
| 374 | 113.51 | atmosphere | 995 | 1440 | < th | dose independent | sin | 8 | NA |
| 392 | 113.70 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 460 | 113.87 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 8 | NA |
| 465 | 113.89 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 472 | 113.95 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 482 | 114.05 | humidity | 70 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 483 | 114.06 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 555 | 114.12 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 663 | 114.34 | humidity | 70 | 270 | < th | dose independent | rect. | 18 | 1 |
| 665 | 114.34 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 692 | 114.38 | atmosphere | 995 | 1440 | > th | dose independent | sin | 19 | NA |
| 693 | 114.38 | atmosphere | 995 | 1440 | < th | dose independent | no | NA | NA |
| 912 | 114.40 | atmosphere | 995 | 1440 | > th | dose independent | no | NA | NA |