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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0453200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0301) R2 : 0.618
β1 : -2.1 (0.111) R2dD : 0.319 R2D : 0.267
β2 : 1.18 (0.0767) R2dC : 0.2 R2C : 0.17
β3 : 0.835 (0.0802) R2dE : 0.1 R2E : -0.0544
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.561 (0.0653) R2dN8 : 0.0866 R2N8 : 0.0867
σ : 0.56
deviance : 144.46
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_____
C
peak time of C : 7.69
E
wheather : temperature
threshold : 32.35
memory length : 1116
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.29 0.542 4.1 -2.23 1.18 0.97 -1.98 -1.22 0.562 7.72 32.32 1132 -- --
133.33 0.538 4.08 -2.05 1.18 0.832 -1.98 -- 0.561 7.71 32.31 1126 -- --
144.39 0.56 4.09 -2.27 1.18 0.97 -- -1.13 0.565 7.71 32.37 1110 -- --
144.46 0.56 4.08 -2.1 1.18 0.835 -- -- 0.561 7.69 32.35 1116 -- --
219.05 0.689 4.12 -2.21 -- 0.906 -- -0.875 0.569 -- 33.04 1192 -- --
167 0.606 4.11 -1.86 1.17 -- -2.04 -- 0.417 7.44 -- -- -- --
178.32 0.625 4.11 -1.91 1.17 -- -- -- 0.419 7.3 -- -- -- --
219 0.689 4.11 -2.07 -- 0.801 -- -- 0.572 -- 33 1192 -- --
256.72 0.746 4.03 -- 1.17 0.638 -- -- 0.762 7.72 33.4 1060 -- --
250.73 0.74 4.14 -1.89 -- -- -- -- 0.439 -- -- -- -- --
274.01 0.774 4.06 -- 1.15 -- -- -- 0.632 7.41 -- -- -- --
328.87 0.845 4.07 -- -- 0.574 -- -- 0.751 -- 33.6 1133 -- --
344.49 0.866 4.09 -- -- -- -- -- 0.648 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.14 humidity 80 1440 < th dose dependent rect. 17 2
9 128.66 humidity 70 1440 > th dose independent rect. 17 14
12 128.82 humidity 70 1440 > th dose independent rect. 17 11
14 128.84 humidity 70 1440 > th dose independent rect. 17 9
18 128.91 humidity 70 1440 > th dose independent rect. 17 3
19 128.92 humidity 70 1440 > th dose independent rect. 17 5
26 129.12 temperature 30 720 > th dose dependent rect. 18 1
48 130.01 humidity 80 1440 < th dose dependent rect. 16 16
49 130.02 humidity 70 1440 < th dose independent rect. 17 14
56 130.22 humidity 70 1440 < th dose independent rect. 17 3
67 130.23 temperature 30 720 > th dose independent rect. 18 1
157 131.31 humidity 50 1440 < th dose independent rect. 16 1
159 131.32 humidity 50 1440 < th dose dependent rect. 16 1
206 131.67 humidity 50 1440 > th dose dependent rect. 17 2
232 132.26 humidity 70 1440 > th dose independent sin 12 NA
261 132.98 humidity 70 1440 < th dose dependent sin 12 NA
365 133.51 humidity 70 1440 < th dose independent sin 12 NA
486 134.30 temperature 30 1440 < th dose independent rect. 18 5
535 134.55 temperature 30 1440 < th dose independent rect. 18 3
542 134.58 temperature 30 1440 < th dose independent rect. 18 14
587 134.81 temperature 30 1440 < th dose independent rect. 18 9
759 135.74 radiation 10 1440 > th dose dependent rect. 17 13
760 135.77 radiation 10 1440 > th dose dependent rect. 17 1
877 136.50 temperature 30 1440 > th dose dependent sin 12 NA
970 136.97 radiation 1 720 > th dose independent rect. 18 1