FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0453100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0467) R2 : 0.173
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.971 (0.122) R2dC : 0.114 R2C : 0.108
β3 : 0.833 (0.142) R2dE : 0.0629 R2E : 0.0576
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.125 (0.0985) R2dN8 : 0.00405 R2N8 : -0.000639
σ : 0.876
deviance : 353.52
__
_____
C
peak time of C : 6.65
E
wheather : temperature
threshold : 25.33
memory length : 1150
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
344.68 0.872 3.41 -0.524 0.957 0.938 -0.548 0.166 -0.195 6.72 25.2 1176 -- --
344.69 0.865 3.41 -0.565 0.958 0.956 -0.551 -- -0.207 6.73 25.18 1175 -- --
345.43 0.866 3.4 -0.507 0.958 0.935 -- 0.271 -0.192 6.73 25.1 1167 -- --
345.45 0.866 3.41 -0.574 0.958 0.959 -- -- -0.207 6.72 25.13 1170 -- --
389.76 0.919 3.42 -0.445 -- 0.931 -- 0.498 -0.182 -- 24.66 1296 -- --
375.8 0.909 3.39 -0.283 0.977 -- -0.426 -- -0.111 6.01 -- -- -- --
376.24 0.908 3.39 -0.287 0.975 -- -- -- -0.11 5.97 -- -- -- --
389.76 0.919 3.44 -0.582 -- 0.976 -- -- -0.222 -- 24.62 1299 -- --
353.52 0.876 3.4 -- 0.971 0.833 -- -- -0.125 6.65 25.33 1150 -- --
425.46 0.964 3.41 -0.258 -- -- -- -- -0.0875 -- -- -- -- --
378.41 0.91 3.39 -- 0.97 -- -- -- -0.0778 5.98 -- -- -- --
397.95 0.929 3.42 -- -- 0.843 -- -- -0.128 -- 24.99 1294 -- --
427.22 0.965 3.4 -- -- -- -- -- -0.0588 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 343.60 temperature 25 720 > th dose dependent rect. 16 6
3 343.63 temperature 25 720 > th dose dependent rect. 17 15
31 345.55 temperature 25 720 > th dose dependent sin 12 NA
42 345.90 radiation 40 1440 > th dose independent rect. 13 2
47 345.94 temperature 25 1440 > th dose dependent rect. 13 6
70 346.11 radiation 40 1440 > th dose independent sin 13 NA
76 346.19 temperature 10 14400 > th dose dependent rect. 17 1
88 346.28 temperature 20 14400 > th dose dependent rect. 19 1
107 346.45 humidity 70 720 < th dose independent rect. 17 16
121 346.56 temperature 30 14400 < th dose dependent rect. 17 1
140 346.62 temperature 30 14400 < th dose dependent rect. 19 1
142 346.63 temperature 25 14400 > th dose independent rect. 19 1
143 346.63 radiation 40 1440 > th dose dependent sin 14 NA
145 346.64 temperature 25 14400 < th dose independent rect. 19 1
150 346.66 humidity 70 720 > th dose independent rect. 17 17
153 346.67 temperature 25 1440 > th dose dependent sin 18 NA
185 346.80 radiation 30 1440 > th dose dependent rect. 13 20
204 346.89 humidity 70 1440 > th dose independent sin 12 NA
216 346.92 radiation 40 1440 > th dose dependent rect. 12 3
303 347.16 temperature 10 1440 > th dose dependent rect. 16 1
311 347.18 humidity 70 720 < th dose independent sin 11 NA
359 347.29 radiation 30 1440 > th dose dependent rect. 14 1
454 347.44 temperature 30 14400 < th dose independent rect. 18 8
517 347.53 temperature 25 1440 > th dose dependent rect. 22 23
532 347.56 temperature 25 1440 > th dose dependent no NA NA
538 347.57 temperature 30 14400 < th dose independent rect. 18 13
551 347.62 temperature 30 14400 < th dose independent rect. 18 4
586 347.66 humidity 70 1440 > th dose independent rect. 17 9
604 347.70 temperature 25 1440 > th dose dependent rect. 17 23
612 347.73 humidity 70 1440 > th dose independent rect. 17 4
655 347.79 radiation 40 1440 < th dose independent rect. 13 2
684 347.84 temperature 25 1440 > th dose dependent rect. 15 23
685 347.85 radiation 40 1440 < th dose independent rect. 13 14
694 347.86 temperature 30 14400 < th dose dependent rect. 21 1
697 347.87 radiation 40 1440 < th dose independent rect. 13 11
720 347.91 radiation 40 1440 < th dose independent rect. 13 9
728 347.92 radiation 40 1440 < th dose independent rect. 13 6
742 347.94 temperature 30 14400 > th dose independent rect. 15 1
746 347.95 radiation 40 1440 < th dose independent rect. 13 18
756 347.98 temperature 30 720 < th dose independent rect. 16 17
759 347.99 temperature 30 14400 < th dose independent rect. 15 1
791 348.06 radiation 40 1440 < th dose independent sin 13 NA
800 348.08 temperature 20 14400 > th dose independent rect. 21 4
842 348.11 temperature 30 720 > th dose independent rect. 16 17
905 348.22 temperature 20 14400 > th dose independent rect. 20 7
908 348.23 temperature 20 14400 < th dose independent rect. 21 4
940 348.28 radiation 10 1440 > th dose independent sin 12 NA
941 348.28 temperature 20 14400 > th dose independent rect. 22 1
943 348.28 humidity 70 1440 < th dose independent rect. 17 3
988 348.35 temperature 25 720 > th dose independent rect. 17 5
996 348.37 temperature 30 14400 > th dose dependent sin 12 NA