Os02g0453000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0453000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.42 | 0.806 | 5.05 | -1.56 | 0.327 | -2.94 | 0.855 | -1.08 | 0.319 | 19.1 | 22.33 | 3879 | -- | -- |
| 294.89 | 0.8 | 5.08 | -1.61 | 0.315 | -2.58 | 0.89 | -- | 0.3 | 19.1 | 22.82 | 3867 | -- | -- |
| 296.15 | 0.801 | 5.06 | -1.59 | 0.332 | -2.83 | -- | -0.813 | 0.3 | 19.1 | 22.61 | 3909 | -- | -- |
| 296.79 | 0.802 | 5.08 | -1.66 | 0.328 | -2.61 | -- | -- | 0.281 | 19.1 | 22.8 | 3878 | -- | -- |
| 301.62 | 0.809 | 5.06 | -1.56 | -- | -2.79 | -- | -0.647 | 0.304 | -- | 22.72 | 3759 | -- | -- |
| 392.31 | 0.929 | 4.95 | -0.324 | 0.339 | -- | 0.883 | -- | 0.897 | 19.8 | -- | -- | -- | -- |
| 394.39 | 0.93 | 4.95 | -0.349 | 0.338 | -- | -- | -- | 0.896 | 20.5 | -- | -- | -- | -- |
| 302.16 | 0.81 | 5.08 | -1.65 | -- | -2.66 | -- | -- | 0.282 | -- | 22.82 | 3743 | -- | -- |
| 331.56 | 0.848 | 5 | -- | 0.12 | -2.04 | -- | -- | 0.614 | 18.8 | 24.19 | 540 | -- | -- |
| 400.79 | 0.935 | 4.94 | -0.351 | -- | -- | -- | -- | 0.893 | -- | -- | -- | -- | -- |
| 397.6 | 0.933 | 4.94 | -- | 0.34 | -- | -- | -- | 0.935 | 20.4 | -- | -- | -- | -- |
| 332.24 | 0.849 | 5.01 | -- | -- | -2.04 | -- | -- | 0.593 | -- | 24.58 | 535 | -- | -- |
| 404.03 | 0.938 | 4.93 | -- | -- | -- | -- | -- | 0.932 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 4 | 294.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 6 | 295.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 12 | 295.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 17 | 296.16 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 46 | 297.09 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 51 | 297.34 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 82 | 298.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 11 |
| 99 | 298.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 132 | 298.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 19 |
| 140 | 299.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 186 | 299.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 19 |
| 196 | 299.62 | temperature | 25 | 4320 | < th | dose dependent | sin | 18 | NA |
| 198 | 299.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 19 |
| 210 | 299.81 | temperature | 20 | 4320 | < th | dose dependent | sin | 15 | NA |
| 233 | 300.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 21 |
| 240 | 300.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 21 |
| 348 | 300.95 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 426 | 301.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 442 | 301.68 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 446 | 301.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 448 | 301.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 467 | 301.82 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 485 | 301.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 572 | 302.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 584 | 302.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 795 | 303.48 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 875 | 303.94 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 904 | 304.07 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 925 | 304.18 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |