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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0452800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0327) R2 : 0.00231
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0708 (0.0689) R2dN8 : 0.00299 R2N8 : 0.00231
σ : 0.616
deviance : 174.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.64 0.601 2.82 0.166 0.0732 1.01 0.419 -0.309 0.122 20.7 49.2 99 -- --
163.3 0.595 2.82 0.163 0.0885 1.19 0.455 -- 0.119 20.7 48.55 88 -- --
163.54 0.596 2.82 0.151 0.0399 1.43 -- -1.36 0.143 21.2 48 88 -- --
163.94 0.596 2.82 0.151 0.0973 1.17 -- -- 0.119 19.5 48.52 88 -- --
163.24 0.595 2.83 0.101 -- 2.05 -- -3.08 0.122 -- 48.64 87 -- --
170.62 0.612 2.83 0.247 0.159 -- 0.56 -- 0.0985 18.6 -- -- -- --
171.37 0.613 2.82 0.24 0.163 -- -- -- 0.101 18 -- -- -- --
164.38 0.597 2.82 0.146 -- 1.27 -- -- 0.119 -- 49 100 -- --
164.53 0.597 2.82 -- 0.0928 1.22 -- -- 0.103 19.8 48.44 88 -- --
172.75 0.614 2.82 0.235 -- -- -- -- 0.0969 -- -- -- -- --
172.89 0.615 2.83 -- 0.16 -- -- -- 0.0739 18.1 -- -- -- --
164.93 0.598 2.82 -- -- 1.32 -- -- 0.104 -- 48.93 100 -- --
174.21 0.616 2.83 -- -- -- -- -- 0.0708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.88 temperature 20.0 30 > th dose dependent rect. 2 1
2 156.03 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 156.06 temperature 20.0 30 > th dose independent rect. 2 1
5 156.06 atmosphere 1005.0 30 > th dose independent rect. 2 1
8 156.15 wind 3.0 30 < th dose dependent rect. 2 1
11 156.22 wind 3.0 30 < th dose independent rect. 2 1
14 156.28 humidity 80.0 30 > th dose independent rect. 2 1
16 156.36 humidity 50.0 30 > th dose dependent rect. 2 1
18 156.37 wind 9.0 30 < th dose independent rect. 2 1
19 156.37 temperature 10.0 30 > th dose independent rect. 2 1
21 156.37 temperature 30.0 30 < th dose independent rect. 2 1
22 156.37 humidity 50.0 30 > th dose independent rect. 2 1
26 156.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 156.37 radiation 1.0 30 < th dose independent rect. 2 1
33 156.37 precipitation 0.1 30 < th dose independent rect. 2 1
34 156.37 temperature 10.0 30 > th dose independent rect. 3 23
36 156.37 radiation 1.0 30 < th dose dependent rect. 2 1
41 156.37 precipitation 0.1 30 < th dose dependent rect. 2 1
48 157.09 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 157.34 temperature 30.0 30 < th dose dependent rect. 2 1
51 157.58 humidity 50.0 10 < th dose dependent rect. 13 5
70 157.76 humidity 50.0 10 < th dose independent rect. 13 5
88 157.88 humidity 50.0 30 < th dose independent rect. 17 22
91 158.05 wind 1.0 30 > th dose independent rect. 2 1
117 158.56 humidity 50.0 30 < th dose independent rect. 17 19
121 158.63 precipitation 0.1 10 > th dose independent rect. 19 1
131 158.63 precipitation 0.1 10 > th dose dependent rect. 19 1
143 158.85 humidity 50.0 10 < th dose independent sin 13 NA
144 158.88 humidity 50.0 10 < th dose dependent sin 12 NA
146 158.99 humidity 50.0 30 < th dose dependent rect. 17 19
148 159.05 humidity 50.0 30 < th dose independent rect. 17 1
216 159.50 humidity 50.0 30 < th dose dependent rect. 17 1
234 159.61 wind 3.0 90 > th dose dependent rect. 12 2
286 159.91 wind 5.0 90 > th dose independent rect. 12 2
305 160.02 humidity 90.0 720 < th dose independent rect. 14 1
326 160.21 humidity 50.0 10 > th dose independent sin 13 NA
330 160.38 humidity 50.0 90 < th dose dependent rect. 12 2
331 160.40 radiation 10.0 30 > th dose independent rect. 17 1
344 160.43 humidity 50.0 90 < th dose independent rect. 13 1
370 160.48 humidity 50.0 90 < th dose independent rect. 10 4
449 160.67 humidity 50.0 30 > th dose independent rect. 14 12
450 160.70 wind 9.0 30 < th dose independent rect. 3 23
526 160.93 humidity 50.0 30 > th dose independent rect. 3 23
587 161.04 wind 7.0 30 > th dose dependent rect. 19 1
591 161.10 humidity 50.0 90 > th dose independent rect. 21 23
593 161.16 radiation 30.0 90 > th dose independent rect. 12 1
625 161.35 wind 3.0 90 > th dose independent rect. 12 9
626 161.35 wind 1.0 10 > th dose dependent rect. 13 1
752 161.90 wind 3.0 10 > th dose independent rect. 13 8
761 162.03 humidity 50.0 90 < th dose dependent rect. 12 6
783 162.22 humidity 50.0 30 < th dose dependent sin 7 NA
862 162.37 precipitation 0.1 10 > th dose independent sin 21 NA
863 162.39 precipitation 0.1 10 > th dose dependent sin 21 NA
864 162.39 radiation 1.0 10 > th dose dependent rect. 17 1
929 162.73 precipitation 0.1 10 < th dose independent sin 21 NA
930 162.73 wind 5.0 10 < th dose independent rect. 17 1
933 162.73 precipitation 0.1 10 < th dose dependent sin 21 NA
937 162.76 temperature 30.0 10 > th dose dependent rect. 17 1
938 162.76 radiation 20.0 90 > th dose dependent rect. 12 1
985 162.96 humidity 50.0 30 < th dose independent sin 9 NA
986 162.97 radiation 20.0 10 > th dose independent rect. 13 1
999 162.99 humidity 50.0 90 > th dose independent rect. 9 16