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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0450400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0342) R2 : 0.0259
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.251 (0.072) R2dN8 : 0.0334 R2N8 : 0.0259
σ : 0.644
deviance : 190.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.49 0.638 3.04 -0.343 0.363 0.22 2.74 2.41 0.208 12.5 0.1914 84 -- --
187.27 0.642 3.02 -0.19 0.342 0.221 0.0667 -- 0.247 12.1 3.74e-05 5 -- --
187.26 0.637 3.03 -0.25 0.0986 -0.139 -- 0.489 0.181 11.9 60.07 897 -- --
187.14 0.637 3.02 -0.189 0.343 0.221 -- -- 0.244 12.1 0.06 5 -- --
187.5 0.641 3.03 -0.199 -- -0.211 -- 0.364 0.231 -- 60.07 897 -- --
188.68 0.644 3.03 -0.207 0.102 -- 0.023 -- 0.23 13.8 -- -- -- --
188.69 0.643 3.03 -0.207 0.102 -- -- -- 0.23 13.9 -- -- -- --
187.81 0.641 3.03 -0.211 -- -0.212 -- -- 0.23 -- 60.07 897 -- --
188.1 0.639 3.02 -- 0.341 0.216 -- -- 0.248 12.2 0.05999 5 -- --
189.31 0.643 3.03 -0.211 -- -- -- -- 0.227 -- -- -- -- --
189.81 0.644 3.02 -- 0.106 -- -- -- 0.253 13.9 -- -- -- --
188.37 0.639 3.03 -- -- -0.257 -- -- 0.242 -- 98.59 75 -- --
190.49 0.644 3.02 -- -- -- -- -- 0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.33 wind 5.0 90 > th dose dependent rect. 2 1
2 169.34 wind 5.0 90 > th dose independent rect. 2 1
6 175.15 radiation 30.0 720 > th dose independent rect. 15 17
7 175.91 radiation 30.0 720 > th dose independent rect. 15 1
8 175.95 wind 5.0 270 > th dose dependent rect. 1 3
9 175.96 wind 5.0 270 > th dose independent rect. 1 3
62 178.32 wind 3.0 90 < th dose dependent rect. 19 1
71 178.74 atmosphere 1005.0 10 < th dose independent rect. 3 1
90 179.00 wind 5.0 1440 > th dose dependent rect. 2 3
94 179.06 humidity 80.0 30 < th dose independent rect. 1 3
99 179.07 humidity 80.0 30 < th dose dependent rect. 1 3
101 179.09 radiation 30.0 720 > th dose dependent rect. 15 17
104 179.13 humidity 80.0 30 < th dose independent rect. 1 1
110 179.13 humidity 80.0 30 < th dose dependent rect. 1 1
125 179.33 wind 5.0 1440 > th dose independent rect. 2 3
145 179.48 wind 7.0 1440 > th dose independent rect. 4 1
149 179.49 wind 7.0 1440 > th dose dependent rect. 4 1
165 179.57 wind 3.0 90 < th dose independent rect. 18 1
166 179.60 wind 5.0 1440 < th dose independent rect. 1 4
179 179.70 radiation 20.0 720 > th dose dependent rect. 15 1
184 179.74 precipitation 0.1 270 > th dose independent rect. 24 1
185 179.74 precipitation 0.1 270 > th dose dependent rect. 24 1
195 179.81 wind 3.0 1440 > th dose dependent rect. 2 1
196 179.82 wind 5.0 1440 < th dose independent rect. 24 7
205 179.92 wind 5.0 1440 > th dose independent rect. 24 7
234 180.20 wind 5.0 1440 > th dose dependent rect. 24 8
272 180.46 radiation 10.0 4320 < th dose dependent rect. 12 1
290 180.71 atmosphere 1005.0 30 > th dose independent rect. 20 8
302 180.84 precipitation 0.1 4320 > th dose independent rect. 21 3
303 180.85 precipitation 0.1 4320 < th dose independent rect. 21 3
305 180.85 precipitation 0.1 4320 < th dose dependent rect. 21 3
329 181.07 temperature 30.0 30 < th dose dependent rect. 18 10
332 181.09 precipitation 0.1 4320 > th dose dependent rect. 21 3
342 181.15 atmosphere 995.0 10 > th dose dependent rect. 10 18
345 181.18 atmosphere 1005.0 270 < th dose independent rect. 23 5
348 181.19 precipitation 0.1 4320 > th dose dependent rect. 22 1
351 181.20 atmosphere 995.0 14400 > th dose independent rect. 5 6
387 181.33 radiation 30.0 720 < th dose independent rect. 15 8
425 181.52 radiation 10.0 720 < th dose dependent rect. 16 9
434 181.57 temperature 20.0 270 < th dose independent rect. 22 1
441 181.62 wind 9.0 1440 < th dose independent rect. 5 5
450 181.66 atmosphere 1015.0 90 < th dose dependent rect. 2 1
451 181.66 radiation 10.0 720 < th dose dependent rect. 16 7
458 181.71 temperature 20.0 90 < th dose independent rect. 23 3
469 181.76 temperature 20.0 90 > th dose independent rect. 2 1
476 181.79 temperature 30.0 10 < th dose dependent rect. 2 2
478 181.79 radiation 1.0 720 > th dose dependent rect. 15 15
480 181.80 precipitation 0.1 43200 < th dose independent rect. 4 15
482 181.80 precipitation 0.1 43200 < th dose dependent rect. 4 15
483 181.81 temperature 20.0 10 < th dose independent rect. 4 1
494 181.82 precipitation 0.1 43200 > th dose independent rect. 4 15
505 181.86 temperature 30.0 90 < th dose dependent rect. 2 1
512 181.89 temperature 20.0 30 < th dose independent rect. 24 5
522 181.91 wind 9.0 1440 < th dose dependent rect. 24 3
535 181.93 wind 3.0 1440 > th dose independent rect. 15 1
537 181.93 temperature 20.0 14400 > th dose independent rect. 16 1
550 181.96 atmosphere 995.0 14400 > th dose independent rect. 5 2
551 181.96 wind 5.0 10 < th dose independent rect. 4 6
554 181.97 radiation 10.0 4320 < th dose independent rect. 12 1
555 181.97 wind 7.0 1440 < th dose independent rect. 21 6
572 182.01 precipitation 0.1 4320 > th dose independent rect. 12 1
579 182.01 precipitation 0.1 4320 > th dose dependent rect. 12 1
605 182.08 atmosphere 1005.0 270 < th dose independent rect. 24 1
608 182.09 precipitation 0.1 10 < th dose independent rect. 2 2
613 182.09 precipitation 0.1 10 < th dose dependent rect. 2 2
614 182.09 wind 7.0 10 < th dose dependent rect. 4 6
618 182.10 wind 3.0 10 < th dose dependent rect. 2 2
629 182.13 temperature 25.0 30 < th dose independent rect. 19 9
632 182.13 radiation 10.0 720 < th dose dependent rect. 16 4
634 182.14 humidity 90.0 10 > th dose independent rect. 2 2
636 182.14 radiation 30.0 720 < th dose independent rect. 15 14
638 182.15 wind 3.0 14400 < th dose independent rect. 15 1
642 182.15 wind 1.0 90 > th dose independent rect. 2 18
649 182.16 humidity 50.0 720 > th dose independent rect. 4 11
650 182.16 atmosphere 995.0 10 > th dose dependent rect. 20 8
654 182.18 wind 3.0 1440 < th dose independent rect. 15 1
659 182.18 precipitation 0.1 43200 > th dose dependent rect. 4 13
660 182.19 temperature 20.0 14400 < th dose independent rect. 16 1
661 182.19 humidity 50.0 720 > th dose independent rect. 13 2
663 182.19 wind 1.0 4320 < th dose dependent rect. 18 2
675 182.22 atmosphere 995.0 14400 > th dose independent rect. 1 1
676 182.22 precipitation 0.1 43200 < th dose independent rect. 4 13
678 182.22 precipitation 0.1 43200 < th dose dependent rect. 4 13
681 182.23 temperature 20.0 10 > th dose independent rect. 13 21
686 182.24 humidity 80.0 90 > th dose independent rect. 2 1
695 182.25 precipitation 0.1 43200 > th dose independent rect. 4 13
698 182.26 precipitation 0.1 1440 > th dose independent rect. 24 1
702 182.26 precipitation 0.1 1440 > th dose dependent rect. 24 1
704 182.27 atmosphere 995.0 14400 > th dose independent rect. 22 5
710 182.28 radiation 30.0 720 < th dose independent rect. 15 16
730 182.32 atmosphere 995.0 14400 > th dose independent rect. 22 1
735 182.33 wind 1.0 4320 > th dose independent rect. 19 1
742 182.34 wind 7.0 1440 > th dose independent rect. 21 4
745 182.34 atmosphere 1015.0 10 < th dose dependent rect. 2 2
751 182.34 radiation 10.0 720 < th dose dependent rect. 16 13
758 182.35 radiation 10.0 43200 < th dose dependent rect. 21 7
759 182.36 wind 1.0 4320 < th dose independent rect. 19 1
764 182.37 atmosphere 1005.0 1440 < th dose independent rect. 23 2
786 182.38 wind 1.0 270 < th dose dependent rect. 9 18
791 182.39 radiation 10.0 4320 < th dose dependent rect. 12 5
798 182.41 atmosphere 995.0 14400 > th dose independent rect. 22 13
807 182.42 precipitation 0.1 43200 > th dose dependent rect. 4 15
832 182.46 wind 1.0 90 < th dose independent rect. 2 1
835 182.46 precipitation 0.1 43200 > th dose independent rect. 7 9
845 182.47 atmosphere 995.0 14400 > th dose independent rect. 24 11
854 182.48 atmosphere 1005.0 1440 < th dose independent rect. 22 4
859 182.49 precipitation 0.1 43200 > th dose independent sin 1 NA
860 182.49 precipitation 0.1 43200 < th dose independent sin 1 NA
861 182.49 wind 3.0 14400 > th dose independent rect. 15 1
865 182.49 precipitation 0.1 43200 < th dose independent rect. 7 9
871 182.49 precipitation 0.1 43200 < th dose dependent sin 1 NA
873 182.49 precipitation 0.1 43200 < th dose dependent rect. 7 9
890 182.52 atmosphere 995.0 14400 > th dose independent rect. 19 8
894 182.52 wind 1.0 270 < th dose dependent rect. 20 7
899 182.53 wind 3.0 14400 < th dose dependent rect. 15 1
904 182.54 humidity 70.0 270 < th dose independent rect. 17 1
907 182.54 humidity 50.0 720 > th dose independent rect. 21 18
910 182.55 atmosphere 1005.0 1440 > th dose independent rect. 23 2
913 182.55 atmosphere 995.0 14400 > th dose independent rect. 22 9
917 182.55 wind 5.0 10 < th dose dependent rect. 19 9
924 182.56 wind 9.0 43200 < th dose independent rect. 6 6
927 182.56 atmosphere 995.0 14400 > th dose independent rect. 19 16
928 182.56 precipitation 0.1 10 < th dose independent rect. 10 18
933 182.56 precipitation 0.1 10 < th dose dependent rect. 10 18
943 182.58 humidity 90.0 30 < th dose independent rect. 20 7
955 182.59 atmosphere 995.0 14400 < th dose independent rect. 1 1
960 182.59 atmosphere 995.0 14400 < th dose independent rect. 21 1
999 182.59 atmosphere 1005.0 10 > th dose independent rect. 23 5