Os02g0439200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase PKN/PRK1, effector domain containing protein.
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Os02g0439200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase PKN/PRK1, effector domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.9 | 0.453 | 8.18 | 0.61 | 1.24 | -0.631 | 0.0571 | 0.977 | -0.511 | 6.89 | 19.7 | 876 | -- | -- |
| 95 | 0.454 | 8.19 | 0.498 | 1.24 | -0.778 | -0.0816 | -- | -0.519 | 6.83 | 19.64 | 1055 | -- | -- |
| 92.9 | 0.449 | 8.18 | 0.613 | 1.25 | -0.632 | -- | 0.972 | -0.509 | 6.89 | 19.7 | 888 | -- | -- |
| 94.66 | 0.453 | 8.2 | 0.492 | 1.23 | -0.871 | -- | -- | -0.535 | 6.82 | 19.27 | 906 | -- | -- |
| 171.54 | 0.61 | 8.2 | 0.704 | -- | -0.941 | -- | 0.777 | -0.439 | -- | 19.48 | 665 | -- | -- |
| 108.23 | 0.488 | 8.24 | 0.182 | 1.28 | -- | -0.137 | -- | -0.685 | 7.14 | -- | -- | -- | -- |
| 108.28 | 0.487 | 8.23 | 0.179 | 1.28 | -- | -- | -- | -0.685 | 7.14 | -- | -- | -- | -- |
| 172.39 | 0.612 | 8.23 | 0.569 | -- | -1.04 | -- | -- | -0.49 | -- | 19.3 | 669 | -- | -- |
| 99.97 | 0.466 | 8.22 | -- | 1.25 | -0.643 | -- | -- | -0.627 | 6.89 | 19.4 | 898 | -- | -- |
| 195.35 | 0.653 | 8.26 | 0.203 | -- | -- | -- | -- | -0.662 | -- | -- | -- | -- | -- |
| 109.12 | 0.489 | 8.24 | -- | 1.29 | -- | -- | -- | -0.705 | 7.13 | -- | -- | -- | -- |
| 179.72 | 0.624 | 8.25 | -- | -- | -0.843 | -- | -- | -0.574 | -- | 19.3 | 660 | -- | -- |
| 196.43 | 0.654 | 8.27 | -- | -- | -- | -- | -- | -0.685 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 92.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 3 | 92.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 4 | 92.54 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 5 | 92.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 6 | 92.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 7 | 92.70 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 14 | 93.00 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 15 | 93.02 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 16 | 93.02 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 19 |
| 22 | 93.09 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 27 | 93.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 31 | 93.13 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 34 | 93.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 40 | 93.20 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 44 | 93.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 45 | 93.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 51 | 93.30 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 53 | 93.30 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 77 | 93.40 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 104 | 93.51 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 105 | 93.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 119 | 93.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 121 | 93.56 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 135 | 93.58 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 20 |
| 172 | 93.73 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 177 | 93.74 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 193 | 93.79 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 198 | 93.79 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 22 |
| 241 | 93.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 256 | 94.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 277 | 94.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 287 | 94.08 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 295 | 94.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 302 | 94.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 313 | 94.14 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 14 |
| 321 | 94.15 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 331 | 94.17 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 333 | 94.18 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 336 | 94.19 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 344 | 94.20 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 351 | 94.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 352 | 94.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 367 | 94.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 386 | 94.26 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 389 | 94.26 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 417 | 94.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 444 | 94.34 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 465 | 94.37 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 477 | 94.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 486 | 94.39 | wind | 9 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 497 | 94.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 508 | 94.42 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 509 | 94.42 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 522 | 94.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 528 | 94.45 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 12 |
| 578 | 94.50 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 605 | 94.53 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 615 | 94.54 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 657 | 94.58 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 701 | 94.63 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 718 | 94.64 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 23 |
| 727 | 94.65 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 739 | 94.66 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 23 |
| 754 | 94.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 791 | 94.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 810 | 94.74 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 829 | 94.75 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 840 | 94.77 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 848 | 94.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 861 | 94.78 | humidity | 60 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 866 | 94.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 889 | 94.81 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 904 | 94.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 908 | 94.83 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 922 | 94.84 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 983 | 94.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 998 | 94.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 6 |