Os02g0437300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0437300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.26 | 0.636 | 8.9 | -0.061 | 1.63 | -2.06 | -1.28 | 3.46 | -0.417 | 22.2 | 1.02 | 247 | 4.08 | 0.45 |
| 183.99 | 0.632 | 8.92 | -0.188 | 1.63 | -1.78 | -1.4 | -- | -0.401 | 22.2 | 1.101 | 331 | 4.08 | 0.433 |
| 189.53 | 0.641 | 8.89 | 0.036 | 1.65 | -2.11 | -- | 4.42 | -0.415 | 22.1 | 1 | 247 | 4.08 | 0.45 |
| 191.78 | 0.645 | 8.92 | -0.18 | 1.64 | -1.65 | -- | -- | -0.409 | 22.1 | 1.131 | 326 | 4.08 | 0.433 |
| 285.46 | 0.787 | 8.87 | -0.192 | -- | -2.09 | -- | 2.87 | -0.643 | -- | 1.505 | 461 | 4.23 | 0.417 |
| 238.24 | 0.724 | 8.9 | -0.38 | 1.86 | -- | -0.933 | -- | -0.295 | 21.3 | -- | -- | -- | -- |
| 241.28 | 0.727 | 8.9 | -0.345 | 1.87 | -- | -- | -- | -0.293 | 21.2 | -- | -- | -- | -- |
| 258.09 | 0.748 | 8.87 | -0.457 | -- | -1.55 | -- | -- | -0.4 | -- | 2.896 | 461 | 4.12 | 0.697 |
| 192.67 | 0.646 | 8.92 | -- | 1.64 | -1.67 | -- | -- | -0.402 | 22.1 | 1.107 | 327 | 4.07 | 0.438 |
| 443.92 | 0.985 | 8.85 | -0.338 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 244.42 | 0.731 | 8.89 | -- | 1.87 | -- | -- | -- | -0.254 | 21.2 | -- | -- | -- | -- |
| 253 | 0.741 | 8.85 | -- | -- | -1.42 | -- | -- | -0.279 | -- | 7.998 | 482 | 3.82 | 0.769 |
| 446.93 | 0.987 | 8.84 | -- | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.30 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 190.56 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 3 | 190.87 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 4 | 193.68 | wind | 3 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 194.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 195.54 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 4 |
| 10 | 196.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 12 | 196.55 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 16 | 196.83 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 9 |
| 18 | 197.01 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 22 | 197.38 | wind | 3 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 27 | 197.55 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 12 |
| 38 | 197.77 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 48 | 197.98 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 59 | 198.34 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 13 |
| 90 | 199.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 97 | 199.68 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 15 |
| 98 | 199.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 108 | 199.98 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 111 | 200.04 | radiation | 1 | 90 | < th | dose dependent | rect. | 12 | 16 |
| 138 | 200.58 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 146 | 200.71 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 13 |
| 150 | 200.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 157 | 200.93 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 166 | 201.16 | radiation | 1 | 30 | < th | dose dependent | sin | 11 | NA |
| 172 | 201.25 | radiation | 1 | 30 | < th | dose independent | sin | 11 | NA |
| 193 | 201.66 | temperature | 25 | 30 | < th | dose independent | rect. | 18 | 10 |
| 200 | 201.78 | radiation | 1 | 90 | < th | dose independent | rect. | 12 | 16 |
| 202 | 201.78 | radiation | 1 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 236 | 202.52 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 239 | 202.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 252 | 202.66 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 273 | 202.86 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 292 | 203.14 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 23 |
| 321 | 203.38 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 335 | 203.50 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 353 | 203.75 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 400 | 204.27 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 403 | 204.30 | radiation | 1 | 30 | < th | dose independent | rect. | 23 | 23 |
| 408 | 204.34 | radiation | 1 | 30 | > th | dose independent | rect. | 13 | 23 |
| 422 | 204.51 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 444 | 204.74 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 460 | 204.79 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 10 |
| 475 | 204.95 | radiation | 1 | 30 | < th | dose dependent | no | NA | NA |
| 484 | 204.95 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 489 | 204.99 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 492 | 205.00 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 496 | 205.04 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 526 | 205.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 537 | 205.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 538 | 205.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 566 | 205.53 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 4 | 4 |
| 583 | 205.64 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 22 |
| 595 | 205.71 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 608 | 205.77 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 617 | 205.82 | radiation | 1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 622 | 205.87 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 641 | 205.95 | wind | 1 | 90 | > th | dose independent | sin | 2 | NA |
| 670 | 206.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 673 | 206.05 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 4 |
| 696 | 206.18 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 2 |
| 710 | 206.23 | temperature | 25 | 90 | < th | dose independent | sin | 14 | NA |
| 722 | 206.26 | radiation | 1 | 10 | < th | dose independent | rect. | 19 | 21 |
| 729 | 206.29 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 10 |
| 756 | 206.38 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 776 | 206.44 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 815 | 206.53 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 836 | 206.59 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 852 | 206.64 | wind | 3 | 90 | < th | dose dependent | sin | 4 | NA |
| 856 | 206.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 857 | 206.67 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 21 |
| 897 | 206.82 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 910 | 206.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 972 | 207.09 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 973 | 207.10 | wind | 1 | 90 | < th | dose independent | sin | 4 | NA |
| 984 | 207.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 22 |