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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0435900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0443) R2 : 0.239
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.13 (0.19) R2dE : 0.227 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.683 (0.0962) R2dN8 : 0.118 R2N8 : 0.0112
σ : 0.824
deviance : 313.38
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -7.283
memory length : 1095
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
295.05 0.807 4.17 -0.0368 0.822 -2.29 -1.62 0.706 0.702 17 -7.442 647 -- --
295.4 0.8 4.19 -0.162 0.846 -2.29 -1.5 -- 0.669 16.9 10.46 629 -- --
300.42 0.807 4.19 -0.181 0.979 -2.37 -- -0.025 0.668 16.4 -24.05 513 -- --
300.36 0.807 4.19 -0.183 1.01 -2.36 -- -- 0.666 16.3 -25.6 478 -- --
312.41 0.823 4.18 0.0624 -- -1.96 -- 0.834 0.674 -- -61.85 1128 -- --
362.19 0.892 4.25 -0.695 0.593 -- -0.87 -- 0.321 14.7 -- -- -- --
363.95 0.893 4.25 -0.717 0.593 -- -- -- 0.314 13.8 -- -- -- --
313.01 0.824 4.18 -0.129 -- -2.07 -- -- 0.66 -- -55.08 1092 -- --
301.15 0.808 4.18 -- 1.03 -2.44 -- -- 0.696 16.3 -8.667 488 -- --
385.22 0.917 4.26 -0.742 -- -- -- -- 0.301 -- -- -- -- --
377.51 0.909 4.24 -- 0.606 -- -- -- 0.394 13.9 -- -- -- --
313.38 0.824 4.17 -- -- -2.13 -- -- 0.683 -- -7.283 1095 -- --
399.74 0.933 4.24 -- -- -- -- -- 0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.19 temperature 10 720 > th dose dependent rect. 15 17
8 290.66 temperature 15 720 > th dose dependent sin 12 NA
11 290.96 temperature 10 720 > th dose dependent rect. 10 22
17 291.38 temperature 30 720 < th dose dependent rect. 16 17
46 293.23 temperature 30 720 < th dose dependent sin 12 NA
82 294.50 temperature 10 720 > th dose dependent rect. 6 23
88 294.83 temperature 15 720 > th dose dependent rect. 15 23
90 294.85 temperature 10 720 > th dose dependent rect. 4 23
98 295.12 temperature 10 720 > th dose dependent rect. 19 23
104 295.36 temperature 10 720 > th dose dependent rect. 24 23
110 295.50 temperature 15 720 > th dose dependent rect. 19 10
113 295.55 temperature 10 720 > th dose dependent no NA NA
135 296.01 temperature 10 720 > th dose dependent rect. 2 23
146 296.24 temperature 15 720 > th dose dependent rect. 17 23
154 296.34 radiation 20 4320 < th dose independent rect. 16 1
207 296.99 temperature 30 4320 < th dose dependent rect. 2 1
212 297.07 temperature 10 4320 > th dose dependent rect. 2 1
213 297.08 temperature 30 720 < th dose dependent rect. 7 23
222 297.17 temperature 25 4320 < th dose independent rect. 13 20
228 297.24 wind 9 43200 > th dose dependent rect. 19 12
252 297.46 temperature 25 4320 > th dose independent rect. 13 20
306 297.85 radiation 20 4320 < th dose independent rect. 16 14
317 297.92 temperature 30 720 < th dose dependent no NA NA
341 298.05 radiation 20 4320 < th dose independent rect. 16 4
387 298.30 temperature 30 720 < th dose dependent rect. 21 23
413 298.41 temperature 25 4320 < th dose independent sin 14 NA
435 298.53 temperature 10 4320 > th dose dependent rect. 21 12
437 298.54 temperature 25 4320 > th dose dependent rect. 13 21
441 298.56 temperature 10 4320 > th dose dependent rect. 24 9
442 298.56 temperature 30 4320 < th dose dependent rect. 21 12
453 298.59 temperature 25 4320 < th dose independent rect. 19 20
461 298.60 temperature 30 4320 < th dose dependent rect. 24 9
467 298.63 temperature 25 4320 > th dose dependent rect. 15 19
480 298.69 temperature 25 4320 > th dose dependent sin 7 NA
486 298.70 temperature 25 4320 > th dose independent sin 14 NA
490 298.72 radiation 20 4320 < th dose independent rect. 16 11
532 298.82 temperature 25 4320 > th dose dependent rect. 19 19
536 298.83 temperature 30 720 < th dose dependent rect. 5 23
548 298.86 temperature 25 4320 > th dose dependent rect. 7 2
559 298.88 temperature 10 4320 > th dose dependent sin 10 NA
572 298.90 temperature 30 720 < th dose dependent rect. 1 23
634 299.06 temperature 20 4320 > th dose dependent rect. 17 10
651 299.10 temperature 30 4320 < th dose dependent sin 11 NA
654 299.11 temperature 25 4320 > th dose independent rect. 14 13
676 299.14 temperature 25 4320 > th dose independent rect. 19 20
758 299.27 temperature 25 4320 > th dose dependent rect. 6 20
786 299.31 temperature 30 720 < th dose dependent rect. 3 23
797 299.33 temperature 20 4320 > th dose dependent rect. 13 15
815 299.34 temperature 25 4320 > th dose dependent rect. 23 23
817 299.35 wind 9 43200 > th dose dependent rect. 19 5
820 299.36 temperature 20 4320 > th dose dependent sin 14 NA
829 299.37 temperature 25 4320 > th dose dependent no NA NA
850 299.39 temperature 10 4320 > th dose dependent rect. 13 15
863 299.41 temperature 10 1440 > th dose dependent rect. 6 3
920 299.47 temperature 10 4320 > th dose dependent rect. 13 20
949 299.52 temperature 25 4320 > th dose dependent rect. 6 16