Os02g0435600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0435600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.49 | 0.344 | 8.77 | -1.14 | 0.222 | -0.664 | 0.942 | 0.103 | -0.241 | 2.53 | 19.9 | 8 | -- | -- |
| 53.5 | 0.341 | 8.77 | -1.15 | 0.223 | -0.66 | 0.908 | -- | -0.246 | 2.51 | 19.9 | 7 | -- | -- |
| 54.99 | 0.345 | 8.8 | -1.35 | 0.228 | -0.611 | -- | -1.06 | -0.305 | 0.897 | 21.93 | 30 | -- | -- |
| 55.88 | 0.348 | 8.78 | -1.17 | 0.215 | -0.697 | -- | -- | -0.251 | 0.707 | 22.05 | 37 | -- | -- |
| 57.17 | 0.352 | 8.78 | -1.27 | -- | -0.825 | -- | -0.879 | -0.257 | -- | 21.7 | 16 | -- | -- |
| 59.78 | 0.362 | 8.8 | -1.29 | 0.466 | -- | 1.03 | -- | -0.357 | 2.3 | -- | -- | -- | -- |
| 63.58 | 0.373 | 8.8 | -1.32 | 0.467 | -- | -- | -- | -0.363 | 1.94 | -- | -- | -- | -- |
| 57.83 | 0.354 | 8.76 | -1.13 | -- | -0.881 | -- | -- | -0.214 | -- | 21.74 | 16 | -- | -- |
| 87.96 | 0.437 | 8.73 | -- | 0.0739 | -1.41 | -- | -- | -0.0439 | 21.4 | 14.4 | 32 | -- | -- |
| 76.71 | 0.409 | 8.8 | -1.3 | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
| 109.28 | 0.489 | 8.77 | -- | 0.442 | -- | -- | -- | -0.216 | 1.86 | -- | -- | -- | -- |
| 88.35 | 0.438 | 8.73 | -- | -- | -1.48 | -- | -- | -0.0416 | -- | 14.35 | 30 | -- | -- |
| 121.12 | 0.514 | 8.76 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.78 | temperature | 20 | 10 | > th | dose dependent | sin | 22 | NA |
| 3 | 51.79 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 4 | 51.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 10 | 52.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 11 | 52.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 13 |
| 13 | 52.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 20 | 52.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 21 | 52.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 35 | 52.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 57 | 52.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 95 | 52.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 127 | 52.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 140 | 52.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 147 | 52.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 150 | 53.01 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 19 |
| 159 | 53.04 | humidity | 50 | 270 | > th | dose independent | rect. | 14 | 7 |
| 207 | 53.19 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 209 | 53.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 225 | 53.22 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 20 |
| 262 | 53.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 277 | 53.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 331 | 53.41 | humidity | 50 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 341 | 53.43 | humidity | 60 | 270 | > th | dose independent | rect. | 3 | 16 |
| 404 | 53.54 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 409 | 53.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 442 | 53.60 | humidity | 50 | 30 | > th | dose dependent | rect. | 14 | 6 |
| 474 | 53.65 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 527 | 53.73 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 547 | 53.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 554 | 53.76 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 18 |
| 579 | 53.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 635 | 53.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 680 | 53.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 7 |
| 717 | 53.95 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 9 |
| 726 | 53.96 | humidity | 60 | 30 | > th | dose independent | rect. | 4 | 20 |
| 752 | 53.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 785 | 54.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 786 | 54.02 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 797 | 54.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 801 | 54.03 | humidity | 70 | 10 | > th | dose independent | rect. | 14 | 20 |
| 819 | 54.04 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 848 | 54.07 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 16 |
| 899 | 54.12 | humidity | 60 | 30 | > th | dose independent | rect. | 7 | 13 |
| 928 | 54.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |