Os02g0435400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0435400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.23 | 0.362 | 7.19 | -0.613 | 0.892 | 0.115 | -0.304 | 2.98 | 0.34 | 21.7 | 30.08 | 237 | -- | -- |
| 59.99 | 0.361 | 7.16 | -0.36 | 0.91 | 0.452 | -0.339 | -- | 0.356 | 21.6 | 29.9 | 253 | -- | -- |
| 59.58 | 0.359 | 7.19 | -0.606 | 0.894 | 0.117 | -- | 3.03 | 0.34 | 21.7 | 30.1 | 236 | -- | -- |
| 60.35 | 0.362 | 7.16 | -0.341 | 0.899 | 0.46 | -- | -- | 0.361 | 21.6 | 29.93 | 253 | -- | -- |
| 105.26 | 0.48 | 7.14 | -0.48 | -- | 0.19 | -- | 1.27 | 0.364 | -- | 30.1 | 236 | -- | -- |
| 64.87 | 0.378 | 7.15 | -0.421 | 0.844 | -- | -0.341 | -- | 0.383 | 22.2 | -- | -- | -- | -- |
| 65.33 | 0.379 | 7.15 | -0.408 | 0.844 | -- | -- | -- | 0.383 | 22.2 | -- | -- | -- | -- |
| 101.21 | 0.471 | 7.12 | -0.327 | -- | 0.291 | -- | -- | 0.435 | -- | 27.4 | 19 | -- | -- |
| 63.33 | 0.371 | 7.15 | -- | 0.909 | 0.516 | -- | -- | 0.394 | 21.5 | 29.9 | 261 | -- | -- |
| 108.67 | 0.487 | 7.13 | -0.395 | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
| 69.71 | 0.391 | 7.14 | -- | 0.842 | -- | -- | -- | 0.428 | 22.2 | -- | -- | -- | -- |
| 103.99 | 0.477 | 7.11 | -- | -- | 0.314 | -- | -- | 0.475 | -- | 27.4 | 19 | -- | -- |
| 112.79 | 0.496 | 7.12 | -- | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 2 | 56.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 3 | 56.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 4 | 56.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 5 | 56.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 6 | 56.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 7 | 57.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 9 | 57.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 10 | 57.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 11 | 57.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 15 | 57.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 36 | 57.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 67 | 57.60 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 68 | 57.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 70 | 57.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 72 | 57.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 88 | 57.75 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 3 | NA |
| 91 | 57.76 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 3 | NA |
| 93 | 57.76 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 113 | 57.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 117 | 57.93 | humidity | 70.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 126 | 58.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 132 | 58.06 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 6 |
| 133 | 58.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 139 | 58.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 147 | 58.11 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 149 | 58.12 | humidity | 70.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 162 | 58.14 | humidity | 70.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 179 | 58.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 194 | 58.18 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 13 |
| 221 | 58.31 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 4 | NA |
| 232 | 58.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 233 | 58.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 240 | 58.39 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 242 | 58.40 | humidity | 70.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 254 | 58.44 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 12 | 16 |
| 257 | 58.44 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 260 | 58.45 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 267 | 58.46 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 12 | 12 |
| 273 | 58.47 | humidity | 70.0 | 90 | > th | dose independent | sin | 13 | NA |
| 295 | 58.51 | humidity | 70.0 | 270 | < th | dose independent | sin | 16 | NA |
| 304 | 58.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 306 | 58.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 310 | 58.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 322 | 58.56 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 347 | 58.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 352 | 58.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 367 | 58.63 | humidity | 70.0 | 270 | > th | dose independent | sin | 17 | NA |
| 379 | 58.65 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 387 | 58.66 | humidity | 70.0 | 30 | > th | dose independent | rect. | 17 | 11 |
| 390 | 58.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 7 |
| 392 | 58.66 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 16 |
| 396 | 58.67 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 435 | 58.72 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 440 | 58.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 444 | 58.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 455 | 58.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 457 | 58.75 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 483 | 58.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 508 | 58.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 524 | 58.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 547 | 58.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 550 | 58.85 | humidity | 80.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 551 | 58.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 553 | 58.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 573 | 58.88 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 582 | 58.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 583 | 58.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 586 | 58.89 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 7 |
| 615 | 58.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 699 | 58.97 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 735 | 58.99 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 743 | 59.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 783 | 59.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 789 | 59.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 818 | 59.03 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 5 | NA |
| 826 | 59.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 827 | 59.04 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 869 | 59.07 | humidity | 60.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 871 | 59.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 896 | 59.08 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 939 | 59.10 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 954 | 59.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 955 | 59.11 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 965 | 59.12 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 968 | 59.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 992 | 59.13 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |