Os02g0434800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0434800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.16 | 0.604 | 6.15 | 2.79 | 0.667 | -1.76 | 1.03 | -3.94 | 0.936 | 22.4 | 23.09 | 1507 | -- | -- |
| 176.76 | 0.619 | 6.23 | 2.28 | 0.597 | -1.08 | 1.13 | -- | 0.807 | 22.1 | 25.29 | 1113 | -- | -- |
| 166.62 | 0.601 | 6.16 | 2.78 | 0.681 | -1.58 | -- | -3.77 | 0.931 | 23.2 | 23.02 | 2033 | -- | -- |
| 181.23 | 0.627 | 6.24 | 2.22 | 0.624 | -1.09 | -- | -- | 0.797 | 22.9 | 25.3 | 1280 | -- | -- |
| 182.41 | 0.629 | 6.16 | 2.8 | -- | -1.57 | -- | -3.4 | 0.879 | -- | 25.4 | 784 | -- | -- |
| 193.48 | 0.652 | 6.18 | 2.59 | 0.68 | -- | 1.01 | -- | 1.03 | 22.6 | -- | -- | -- | -- |
| 197.13 | 0.657 | 6.18 | 2.55 | 0.677 | -- | -- | -- | 1.03 | 23.2 | -- | -- | -- | -- |
| 197.04 | 0.654 | 6.23 | 2.18 | -- | -1.32 | -- | -- | 0.743 | -- | 26.33 | 832 | -- | -- |
| 192.8 | 0.647 | 6.39 | -- | 0.638 | -2.13 | -- | -- | 0.109 | 23 | 35.88 | 47520 | -- | -- |
| 225.72 | 0.702 | 6.17 | 2.56 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 368.06 | 0.897 | 6.25 | -- | 0.702 | -- | -- | -- | 0.745 | 23.4 | -- | -- | -- | -- |
| 218.12 | 0.688 | 6.38 | -- | -- | -2.16 | -- | -- | 0.103 | -- | 43.91 | 47520 | -- | -- |
| 398.97 | 0.932 | 6.23 | -- | -- | -- | -- | -- | 0.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 2 | 152.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 153.76 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 4 | 153.92 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 5 | 153.96 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 6 | 154.08 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 14 | 154.52 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 19 | 154.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 20 | 154.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 21 | 154.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 22 | 154.64 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 23 | 154.65 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 25 | 154.68 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 30 | 154.82 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 32 | 154.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 39 | 154.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 47 | 155.15 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 51 | 155.18 | wind | 3 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 57 | 155.24 | humidity | 50 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 76 | 155.40 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 83 | 155.47 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 87 | 155.51 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 89 | 155.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 91 | 155.53 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 118 | 155.72 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 119 | 155.72 | wind | 3 | 14400 | < th | dose dependent | sin | 12 | NA |
| 120 | 155.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 121 | 155.73 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 126 | 155.78 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 141 | 155.87 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 148 | 155.91 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 166 | 156.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 176 | 156.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 180 | 156.09 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 183 | 156.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 208 | 156.14 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 212 | 156.15 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 218 | 156.16 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 223 | 156.18 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 236 | 156.20 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 244 | 156.21 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 249 | 156.22 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 267 | 156.26 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 285 | 156.28 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 300 | 156.30 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 337 | 156.36 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 15 | NA |
| 387 | 156.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 390 | 156.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 399 | 156.42 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 9 |
| 417 | 156.45 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 434 | 156.46 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 7 |
| 462 | 156.50 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 470 | 156.50 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 477 | 156.51 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 537 | 156.55 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 581 | 156.57 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 605 | 156.59 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 649 | 156.62 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 691 | 156.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 704 | 156.66 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 708 | 156.67 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 770 | 156.70 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 783 | 156.70 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 829 | 156.74 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 910 | 156.81 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 10 | NA |
| 924 | 156.83 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 932 | 156.85 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |