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Os02g0331200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.25 (0.025) R2 : 0.437
β1 : -1.7 (0.0933) R2dD : 0.45 R2D : 0.316
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.11 (0.123) R2dE : 0.115 R2E : -0.00494
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.235 (0.0552) R2dN8 : 0.0329 R2N8 : -0.0422
σ : 0.462
deviance : 98.36
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -4.246
memory length : 46
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.86 0.455 6.26 -1.82 0.347 1.46 0.0481 -0.241 -0.301 4.32 10.27 85 -- --
93.91 0.451 6.26 -1.78 0.345 1.47 0.118 -- -0.292 4.16 10.06 73 -- --
93.87 0.451 6.26 -1.82 0.347 1.46 -- -0.282 -0.302 4.34 10.07 86 -- --
93.93 0.451 6.26 -1.78 0.348 1.46 -- -- -0.292 4.32 8.769 83 -- --
98.52 0.465 6.25 -1.72 -- 1.1 -- -0.263 -0.244 -- 10.07 86 -- --
114.79 0.502 6.21 -1.48 0.14 -- -0.0134 -- -0.0859 11.5 -- -- -- --
114.79 0.502 6.21 -1.48 0.141 -- -- -- -0.086 11.5 -- -- -- --
98.36 0.462 6.25 -1.7 -- 1.11 -- -- -0.235 -- -4.246 46 -- --
168.27 0.607 6.19 -- 0.105 0.528 -- -- 0.00169 6.1 19.6 56 -- --
116.03 0.503 6.22 -1.49 -- -- -- -- -0.0875 -- -- -- -- --
172.71 0.615 6.18 -- 0.159 -- -- -- 0.0792 12.1 -- -- -- --
168.78 0.607 6.19 -- -- 0.486 -- -- 0.00973 -- 19.3 42 -- --
174.3 0.616 6.18 -- -- -- -- -- 0.0774 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.67 temperature 15.0 270 > th dose dependent rect. 11 22
12 92.48 temperature 30.0 90 < th dose dependent rect. 9 22
19 92.59 temperature 30.0 270 < th dose dependent rect. 7 22
26 93.01 humidity 80.0 14400 > th dose dependent rect. 22 9
31 93.30 humidity 80.0 14400 > th dose dependent rect. 22 5
33 93.31 humidity 50.0 14400 > th dose dependent rect. 22 6
41 93.38 humidity 80.0 14400 > th dose dependent rect. 23 3
45 93.46 humidity 80.0 43200 < th dose independent rect. 18 1
52 93.58 humidity 80.0 43200 > th dose dependent rect. 5 5
53 93.61 temperature 10.0 10 > th dose dependent sin 15 NA
55 93.61 humidity 50.0 14400 > th dose dependent rect. 23 3
65 93.69 humidity 80.0 43200 > th dose independent rect. 17 3
80 93.76 temperature 30.0 90 < th dose dependent sin 16 NA
88 93.79 temperature 30.0 10 < th dose dependent sin 16 NA
91 93.80 humidity 90.0 43200 < th dose independent rect. 6 1
92 93.81 humidity 80.0 43200 < th dose independent rect. 17 3
96 93.86 temperature 10.0 90 > th dose dependent no NA NA
108 93.94 temperature 15.0 270 > th dose dependent rect. 1 23
117 94.04 radiation 10.0 14400 < th dose independent rect. 18 13
120 94.04 temperature 15.0 270 > th dose dependent rect. 3 23
125 94.06 radiation 10.0 14400 < th dose independent rect. 3 4
126 94.06 radiation 10.0 14400 < th dose independent rect. 1 6
131 94.08 radiation 10.0 14400 < th dose independent rect. 20 11
140 94.09 radiation 1.0 14400 > th dose dependent rect. 18 12
144 94.12 temperature 30.0 90 < th dose dependent rect. 11 20
153 94.17 temperature 30.0 270 < th dose dependent sin 19 NA
158 94.22 radiation 30.0 14400 < th dose independent rect. 3 6
168 94.24 radiation 30.0 14400 < th dose independent rect. 19 14
175 94.25 radiation 30.0 14400 < th dose independent rect. 6 3
188 94.28 radiation 1.0 14400 > th dose dependent rect. 4 2
244 94.44 radiation 30.0 14400 > th dose dependent rect. 7 2
259 94.44 temperature 30.0 90 < th dose dependent rect. 21 23
267 94.48 radiation 40.0 4320 < th dose dependent rect. 3 3
279 94.51 radiation 40.0 4320 < th dose dependent rect. 1 5
288 94.55 radiation 40.0 4320 < th dose dependent rect. 18 12
291 94.57 radiation 1.0 14400 < th dose independent rect. 15 16
294 94.58 radiation 40.0 4320 < th dose independent rect. 14 19
327 94.65 radiation 1.0 14400 > th dose independent rect. 15 2
328 94.65 temperature 30.0 270 < th dose dependent no NA NA
337 94.68 radiation 1.0 14400 < th dose independent rect. 16 1
339 94.69 humidity 90.0 43200 > th dose independent rect. 6 1
341 94.69 radiation 1.0 14400 < th dose independent rect. 10 20
358 94.73 radiation 1.0 14400 < th dose independent rect. 15 6
363 94.74 radiation 1.0 14400 < th dose independent rect. 15 4
395 94.80 radiation 1.0 14400 < th dose independent sin 13 NA
398 94.81 radiation 1.0 14400 < th dose independent rect. 8 22
408 94.82 temperature 30.0 270 < th dose dependent rect. 13 23
409 94.82 temperature 30.0 270 < th dose dependent rect. 15 23
447 94.87 temperature 30.0 30 < th dose dependent rect. 17 23
466 94.91 precipitation 0.1 43200 > th dose independent rect. 6 1
474 94.91 radiation 1.0 14400 > th dose independent rect. 15 16
476 94.91 precipitation 0.1 43200 > th dose dependent rect. 6 1
482 94.92 radiation 1.0 14400 < th dose independent rect. 10 11
490 94.92 temperature 20.0 270 > th dose dependent rect. 17 23
492 94.93 radiation 1.0 14400 < th dose independent rect. 10 9
525 94.96 wind 7.0 43200 > th dose independent rect. 6 3
548 94.96 temperature 30.0 270 < th dose dependent rect. 2 23
559 94.97 radiation 10.0 4320 < th dose dependent rect. 16 14
570 94.99 radiation 1.0 14400 > th dose independent rect. 5 2
620 95.02 precipitation 0.1 43200 < th dose independent rect. 6 1
622 95.02 radiation 1.0 14400 > th dose independent rect. 10 20
626 95.02 precipitation 0.1 43200 < th dose dependent rect. 6 1
651 95.04 temperature 30.0 270 < th dose dependent rect. 19 23
677 95.07 radiation 1.0 14400 < th dose independent rect. 18 23
693 95.08 radiation 1.0 14400 < th dose independent rect. 3 18
695 95.08 radiation 1.0 14400 < th dose independent rect. 1 20
708 95.09 radiation 1.0 14400 < th dose independent no NA NA
720 95.09 radiation 1.0 14400 < th dose independent rect. 4 15
769 95.09 temperature 15.0 10 > th dose dependent rect. 1 23
791 95.11 radiation 40.0 43200 < th dose dependent rect. 18 3
803 95.12 humidity 90.0 43200 < th dose independent rect. 4 11
812 95.12 radiation 1.0 14400 > th dose independent rect. 8 22
853 95.15 radiation 1.0 14400 > th dose independent sin 12 NA
881 95.16 radiation 1.0 14400 > th dose independent rect. 4 13
905 95.17 temperature 30.0 30 < th dose dependent rect. 11 23
948 95.20 temperature 25.0 1440 < th dose dependent rect. 2 2
964 95.22 temperature 15.0 270 > th dose dependent rect. 11 12
965 95.23 radiation 1.0 14400 > th dose independent rect. 10 8
979 95.24 precipitation 0.1 43200 < th dose independent rect. 2 6
986 95.24 precipitation 0.1 43200 < th dose dependent rect. 2 6
992 95.25 precipitation 0.1 43200 > th dose independent rect. 2 6