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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0330200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.037) R2 : 0.00114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0561 (0.078) R2dN8 : 0.00147 R2N8 : 0.00114
σ : 0.697
deviance : 223.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.99 0.684 3.03 -0.22 0.301 1.46 -0.244 -3.58 -0.00613 18.5 0.2228 98 -- --
215.24 0.683 3.01 -0.11 0.283 0.936 -0.114 -- -0.00988 18.6 0.2997 98 -- --
212.1 0.678 3.04 -0.221 0.301 1.49 -- -3.52 -0.0104 18.5 0.1 98 -- --
215.23 0.683 3.01 -0.127 0.284 0.932 -- -- -0.0147 18.5 0.1 98 -- --
216.22 0.685 3.03 -0.196 -- 1.16 -- -3.22 -0.0257 -- 0.03628 100 -- --
221.58 0.698 3.02 -0.0431 0.153 -- -0.363 -- -0.0572 19.5 -- -- -- --
221.92 0.698 3.02 -0.0353 0.152 -- -- -- -0.0582 19.9 -- -- -- --
218.91 0.689 3.01 -0.111 -- 0.686 -- -- -0.0296 -- 0.06919 100 -- --
215.65 0.684 3.01 -- 0.277 0.892 -- -- -0.00195 18.6 0.1337 98 -- --
223.19 0.698 3.01 -0.0369 -- -- -- -- -0.0602 -- -- -- -- --
221.96 0.697 3.02 -- 0.152 -- -- -- -0.0543 19.9 -- -- -- --
219.14 0.689 3.01 -- -- 0.662 -- -- -0.0234 -- 0.09999 98 -- --
223.22 0.697 3.01 -- -- -- -- -- -0.0561 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.14 wind 1.0 10 < th dose independent rect. 8 1
3 206.14 wind 1.0 10 < th dose dependent rect. 8 1
5 208.43 wind 1.0 90 < th dose independent rect. 6 2
8 209.49 wind 1.0 10 < th dose dependent rect. 3 1
11 210.28 humidity 80.0 720 < th dose independent rect. 24 1
13 210.28 humidity 80.0 720 < th dose dependent rect. 24 1
15 210.29 humidity 80.0 90 < th dose dependent rect. 22 1
19 210.42 humidity 80.0 10 < th dose independent rect. 22 2
28 210.49 wind 1.0 90 < th dose dependent rect. 2 3
32 210.55 humidity 80.0 10 < th dose independent rect. 24 4
37 210.55 humidity 80.0 10 < th dose dependent rect. 24 4
74 211.93 wind 1.0 90 < th dose independent rect. 2 3
79 212.28 atmosphere 1005.0 10 > th dose dependent rect. 7 2
82 212.43 wind 1.0 10 < th dose independent rect. 3 1
83 212.48 wind 1.0 90 < th dose dependent rect. 7 22
84 212.55 wind 1.0 90 < th dose dependent rect. 2 7
91 212.78 temperature 30.0 90 > th dose independent rect. 18 16
96 212.91 humidity 50.0 1440 < th dose independent rect. 15 1
98 212.93 humidity 50.0 1440 < th dose dependent rect. 15 3
119 213.03 temperature 30.0 90 < th dose independent sin 11 NA
125 213.17 wind 1.0 90 < th dose dependent rect. 21 8
129 213.22 wind 3.0 4320 > th dose independent rect. 8 2
136 213.26 wind 3.0 4320 < th dose independent rect. 8 2
138 213.30 humidity 80.0 10 < th dose dependent rect. 20 5
174 213.40 wind 1.0 90 < th dose dependent rect. 2 13
175 213.43 humidity 80.0 10 < th dose independent rect. 19 6
179 213.43 wind 1.0 90 < th dose dependent rect. 14 15
181 213.44 atmosphere 1000.0 720 > th dose independent rect. 1 8
182 213.44 temperature 30.0 90 > th dose dependent rect. 18 16
186 213.46 humidity 50.0 1440 < th dose dependent sin 12 NA
205 213.62 humidity 60.0 90 > th dose dependent rect. 16 13
209 213.64 humidity 80.0 90 < th dose dependent rect. 18 6
225 213.75 temperature 30.0 90 > th dose independent sin 11 NA
228 213.77 temperature 30.0 270 > th dose independent rect. 15 19
232 213.79 wind 1.0 14400 < th dose dependent rect. 9 1
235 213.82 temperature 30.0 270 < th dose independent rect. 16 12
237 213.82 humidity 80.0 43200 < th dose dependent rect. 4 3
246 213.88 humidity 50.0 720 > th dose independent rect. 4 17
262 213.96 humidity 50.0 720 > th dose independent rect. 9 7
269 214.00 humidity 60.0 10 > th dose dependent rect. 17 13
271 214.01 wind 5.0 4320 < th dose dependent rect. 8 2
279 214.04 wind 1.0 90 < th dose dependent sin 8 NA
283 214.05 humidity 50.0 720 > th dose independent rect. 13 8
286 214.06 humidity 50.0 720 > th dose independent rect. 9 16
288 214.06 wind 1.0 90 < th dose dependent rect. 14 19
309 214.11 wind 1.0 90 > th dose independent rect. 19 12
329 214.17 temperature 30.0 270 > th dose independent rect. 15 1
343 214.22 temperature 30.0 270 > th dose independent rect. 14 5
375 214.27 radiation 1.0 10 < th dose independent rect. 11 6
377 214.27 wind 1.0 90 < th dose independent rect. 2 8
382 214.27 wind 1.0 14400 > th dose dependent rect. 3 1
410 214.31 humidity 70.0 90 > th dose independent rect. 16 13
411 214.31 wind 5.0 14400 < th dose dependent rect. 3 1
413 214.32 humidity 50.0 1440 < th dose independent rect. 12 6
427 214.32 wind 9.0 14400 < th dose independent rect. 18 20
444 214.35 radiation 1.0 10 < th dose independent rect. 15 2
477 214.38 humidity 90.0 90 > th dose independent rect. 6 10
478 214.38 wind 1.0 4320 > th dose dependent rect. 8 2
479 214.38 temperature 30.0 720 > th dose dependent rect. 18 16
488 214.40 humidity 80.0 10 < th dose independent rect. 16 9
501 214.40 wind 9.0 14400 < th dose dependent rect. 12 1
542 214.44 wind 1.0 14400 > th dose dependent rect. 12 1
550 214.45 wind 9.0 14400 > th dose independent rect. 18 20
563 214.48 humidity 90.0 10 < th dose independent rect. 20 12
568 214.48 wind 1.0 14400 > th dose dependent rect. 3 11
575 214.49 temperature 30.0 720 > th dose independent rect. 18 16
580 214.50 humidity 80.0 43200 < th dose independent rect. 5 1
581 214.50 precipitation 0.1 14400 < th dose independent rect. 24 10
582 214.50 precipitation 0.1 14400 > th dose dependent rect. 24 10
583 214.50 precipitation 0.1 14400 < th dose dependent rect. 24 10
595 214.52 radiation 1.0 90 < th dose independent rect. 8 8
596 214.52 wind 9.0 14400 < th dose dependent rect. 3 11
602 214.53 wind 3.0 14400 < th dose independent rect. 3 1
615 214.54 radiation 10.0 90 < th dose dependent rect. 14 1
623 214.56 wind 3.0 14400 < th dose dependent rect. 12 1
631 214.57 precipitation 0.1 14400 > th dose independent rect. 24 10
657 214.62 wind 9.0 14400 < th dose independent sin 7 NA
676 214.62 temperature 10.0 90 > th dose dependent rect. 2 17
681 214.63 temperature 30.0 720 > th dose independent rect. 9 1
684 214.63 humidity 50.0 720 > th dose independent rect. 9 22
692 214.64 humidity 50.0 1440 > th dose independent rect. 15 1
708 214.66 temperature 30.0 90 > th dose independent rect. 12 22
725 214.68 humidity 60.0 720 > th dose independent rect. 18 7
729 214.68 humidity 80.0 90 > th dose dependent rect. 6 10
731 214.68 humidity 60.0 30 > th dose dependent rect. 17 11
735 214.68 atmosphere 995.0 30 > th dose dependent rect. 19 13
736 214.69 humidity 50.0 1440 < th dose independent sin 17 NA
750 214.70 humidity 60.0 270 > th dose independent rect. 16 11
751 214.70 atmosphere 1000.0 720 > th dose independent rect. 21 16
752 214.70 temperature 30.0 270 > th dose dependent rect. 15 1
755 214.70 wind 1.0 43200 < th dose dependent rect. 8 22
757 214.71 wind 3.0 14400 > th dose independent rect. 4 1
768 214.72 humidity 90.0 90 > th dose independent rect. 14 1
772 214.72 humidity 90.0 90 > th dose dependent rect. 14 1
785 214.73 temperature 30.0 720 < th dose independent rect. 18 16
811 214.75 wind 3.0 14400 < th dose independent rect. 12 1
841 214.78 humidity 80.0 43200 < th dose dependent rect. 20 11
864 214.81 wind 1.0 90 < th dose dependent no NA NA
885 214.83 wind 1.0 30 > th dose independent rect. 9 23
892 214.84 precipitation 0.1 720 < th dose independent rect. 21 16
896 214.84 precipitation 0.1 720 < th dose dependent rect. 21 16
923 214.87 humidity 50.0 1440 < th dose independent no NA NA