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Os02g0329800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF563 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0237) R2 : 0.517
β1 : -0.972 (0.0866) R2dD : 0.138 R2D : 0.0971
β2 : 1.07 (0.0563) R2dC : 0.386 R2C : 0.371
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.226 (0.0505) R2dN8 : 0.0284 R2N8 : -0.00173
σ : 0.445
deviance : 90.29
__
_____
C
peak time of C : 23.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.97 0.418 11.9 -1.35 1.02 0.677 0.318 -1.7 -0.138 23.1 32.94 2668 -- --
79.2 0.414 11.9 -1.1 1.03 0.511 0.33 -- -0.138 23 32.72 2670 -- --
79.39 0.415 11.9 -1.35 1.02 0.674 -- -1.62 -0.137 23.1 32.94 2670 -- --
79.49 0.415 11.9 -1.09 1.02 0.489 -- -- -0.141 23.1 32.76 2670 -- --
143.46 0.558 11.9 -1.29 -- 0.816 -- -1.23 -0.0947 -- 32.08 2576 -- --
89.55 0.444 11.9 -0.956 1.07 -- 0.419 -- -0.225 23.3 -- -- -- --
90.29 0.445 11.9 -0.972 1.07 -- -- -- -0.226 23.2 -- -- -- --
131.31 0.534 11.9 -1.13 -- 1.04 -- -- -0.292 -- 24.5 929 -- --
109.8 0.488 11.9 -- 1.04 0.333 -- -- -0.0802 23 33.72 2739 -- --
162.2 0.595 11.9 -0.946 -- -- -- -- -0.216 -- -- -- -- --
115.2 0.502 11.9 -- 1.06 -- -- -- -0.118 23.1 -- -- -- --
167.64 0.603 11.9 -- -- 0.777 -- -- -0.166 -- 24.7 916 -- --
185.81 0.636 11.9 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.89 temperature 15 720 > th dose dependent rect. 17 7
5 77.38 temperature 15 720 > th dose dependent rect. 15 9
6 77.39 temperature 10 720 > th dose dependent rect. 12 11
12 77.59 humidity 70 4320 < th dose dependent rect. 19 2
26 77.68 humidity 70 4320 < th dose independent rect. 19 2
37 77.69 humidity 70 4320 > th dose independent rect. 19 10
39 77.70 temperature 20 270 > th dose independent rect. 14 16
43 77.73 humidity 70 4320 > th dose independent rect. 19 5
59 77.76 humidity 70 4320 > th dose independent rect. 19 2
79 78.00 temperature 20 720 > th dose dependent rect. 21 1
80 78.02 humidity 50 4320 > th dose independent rect. 15 1
84 78.04 temperature 10 10 > th dose dependent sin 12 NA
85 78.05 atmosphere 995 43200 > th dose independent rect. 18 6
88 78.08 atmosphere 995 43200 < th dose independent rect. 18 6
103 78.30 atmosphere 995 43200 < th dose dependent rect. 16 9
104 78.33 atmosphere 995 43200 < th dose dependent rect. 15 11
108 78.35 humidity 50 4320 > th dose independent rect. 13 4
119 78.48 atmosphere 995 43200 > th dose independent sin 12 NA
120 78.48 atmosphere 995 43200 > th dose independent rect. 17 12
121 78.48 radiation 20 1440 < th dose independent rect. 16 13
122 78.48 atmosphere 995 43200 < th dose dependent rect. 18 4
123 78.49 atmosphere 995 43200 < th dose independent rect. 17 11
126 78.50 atmosphere 995 43200 < th dose independent sin 12 NA
127 78.50 radiation 20 1440 < th dose independent rect. 16 1
130 78.50 temperature 30 30 < th dose dependent rect. 18 10
135 78.54 atmosphere 995 43200 < th dose dependent rect. 17 6
138 78.57 radiation 20 1440 < th dose independent rect. 16 8
146 78.60 radiation 20 1440 < th dose independent rect. 16 5
153 78.62 radiation 20 1440 > th dose independent rect. 16 1
175 78.65 temperature 30 4320 > th dose dependent rect. 18 15
189 78.74 wind 1 1440 > th dose independent rect. 4 1
198 78.81 humidity 60 4320 < th dose dependent rect. 16 3
221 78.91 temperature 30 4320 > th dose dependent rect. 18 1
242 78.97 humidity 50 4320 < th dose independent rect. 15 2
247 79.00 wind 1 1440 < th dose independent rect. 4 1
251 79.03 temperature 10 720 > th dose dependent sin 17 NA
255 79.05 temperature 25 720 > th dose independent rect. 18 5
263 79.08 humidity 50 4320 > th dose independent rect. 15 14
288 79.14 humidity 50 4320 > th dose independent rect. 15 10
290 79.15 humidity 50 4320 > th dose independent rect. 15 5
308 79.20 temperature 10 270 > th dose dependent rect. 15 15
317 79.24 temperature 30 1440 > th dose independent rect. 18 17
323 79.27 temperature 30 1440 < th dose independent rect. 18 17
326 79.27 temperature 15 270 > th dose dependent rect. 13 17
344 79.30 temperature 30 1440 > th dose dependent rect. 18 17
345 79.31 temperature 30 1440 < th dose independent rect. 23 12
352 79.33 temperature 25 720 > th dose independent rect. 19 3
354 79.33 temperature 30 4320 < th dose independent rect. 18 5
360 79.34 temperature 20 10 > th dose independent rect. 15 18
364 79.35 radiation 20 1440 > th dose dependent rect. 16 1
382 79.37 temperature 30 4320 < th dose independent rect. 18 3
383 79.37 temperature 30 1440 < th dose independent rect. 6 5
390 79.38 temperature 30 1440 > th dose independent rect. 8 3
419 79.39 temperature 30 1440 < th dose independent rect. 8 3
432 79.42 temperature 30 1440 > th dose dependent rect. 8 3
470 79.48 humidity 50 4320 > th dose independent rect. 13 16
473 79.48 humidity 90 4320 > th dose dependent rect. 3 2
487 79.51 humidity 50 4320 > th dose independent rect. 13 18
495 79.52 humidity 50 4320 > th dose independent rect. 13 22
511 79.56 temperature 30 4320 > th dose independent rect. 18 1
562 79.64 temperature 30 1440 > th dose independent sin 9 NA
563 79.64 humidity 50 4320 > th dose independent sin 12 NA
569 79.65 temperature 30 1440 < th dose independent sin 9 NA
572 79.65 temperature 30 1440 > th dose dependent sin 9 NA
580 79.66 temperature 15 270 > th dose dependent rect. 21 10
601 79.68 radiation 30 4320 < th dose independent rect. 19 13
614 79.70 temperature 30 720 < th dose dependent rect. 18 3
633 79.71 humidity 50 4320 < th dose independent rect. 11 6
663 79.73 radiation 30 4320 < th dose independent rect. 7 1
676 79.75 humidity 50 4320 > th dose independent rect. 23 18
679 79.76 humidity 50 4320 < th dose independent rect. 13 4
683 79.76 humidity 50 4320 > th dose independent rect. 21 20
684 79.76 humidity 50 4320 < th dose independent rect. 15 23
694 79.78 humidity 50 4320 < th dose independent rect. 15 21
699 79.78 humidity 50 4320 < th dose dependent rect. 16 19
716 79.79 radiation 30 4320 < th dose independent rect. 22 10
733 79.79 wind 1 1440 < th dose dependent rect. 4 2
736 79.80 humidity 50 4320 > th dose independent rect. 10 7
737 79.80 radiation 30 4320 < th dose independent rect. 1 7
806 79.83 humidity 50 4320 > th dose independent rect. 6 11
944 79.93 humidity 50 4320 > th dose independent rect. 15 23
953 79.95 temperature 20 270 > th dose independent rect. 1 6
967 79.98 temperature 25 1440 > th dose dependent rect. 7 1
975 80.00 radiation 30 4320 > th dose independent rect. 7 1