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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0327500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF266, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0407) R2 : 0.262
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.38 (0.187) R2dE : 0.265 R2E : 0.259
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.086) R2dN8 : 0.00295 R2N8 : -0.00323
σ : 0.763
deviance : 268.46
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.91
memory length : 844
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 15.9
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.78 0.744 3.85 0.54 3.34 5.46 1.15 0.737 0.143 15.8 9.23 750 11.2 --
250.73 0.737 3.85 0.561 3.31 5.48 0.555 -- 0.148 15.8 9.111 756 11.4 --
251.8 0.739 3.83 0.645 3.24 5.54 -- -0.181 0.182 15.5 9.255 753 11.7 --
251.49 0.739 3.84 0.595 3.15 5.39 -- -- 0.159 15.7 8.863 762 11.6 --
296.42 0.802 3.75 0.531 -- 1.67 -- 1.6 0.301 -- 46.45 2187 12.5 --
309.53 0.825 3.85 0.536 0.865 -- 0.001 -- 0.0227 1.79 -- -- -- --
309.53 0.824 3.85 0.536 0.865 -- -- -- 0.0227 1.79 -- -- -- --
260.69 0.752 3.83 0.615 -- 2.02 -- -- 0.234 -- 12.98 854 15.5 --
259.74 0.751 3.86 -- 2.94 5.13 -- -- 0.0942 15.8 10 767 11.6 --
354.9 0.88 3.84 0.571 -- -- -- -- 0.0423 -- -- -- -- --
317.1 0.833 3.87 -- 0.875 -- -- -- -0.037 1.81 -- -- -- --
268.46 0.763 3.83 -- -- 2.38 -- -- 0.101 -- 9.91 844 15.9 --
363.51 0.89 3.86 -- -- -- -- -- -0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.60 radiation 10 720 < th dose dependent rect. 14 4
8 250.08 radiation 1 720 < th dose independent rect. 8 10
14 250.73 radiation 1 720 < th dose independent rect. 9 18
26 252.27 radiation 1 720 < th dose independent sin 19 NA
29 252.47 radiation 10 720 < th dose dependent rect. 14 11
47 253.76 radiation 10 720 < th dose dependent rect. 13 14
50 253.89 radiation 10 720 < th dose dependent sin 17 NA
62 254.50 radiation 1 720 > th dose independent rect. 9 10
75 254.85 radiation 10 720 < th dose dependent rect. 14 9
84 255.51 radiation 1 720 > th dose independent rect. 8 22
85 255.52 radiation 1 720 > th dose independent sin 20 NA
88 255.73 radiation 10 720 < th dose dependent rect. 10 16
192 259.59 humidity 50 720 > th dose dependent sin 16 NA
220 260.40 humidity 50 720 > th dose dependent rect. 13 14
374 262.67 humidity 80 720 > th dose independent rect. 11 11
594 264.19 wind 7 720 < th dose independent rect. 14 9
636 264.40 radiation 10 1440 > th dose independent rect. 9 5
705 264.83 radiation 10 1440 > th dose independent rect. 10 3
775 265.17 humidity 90 720 < th dose dependent rect. 14 16
855 265.54 humidity 90 720 < th dose dependent rect. 15 10
894 265.72 wind 7 720 < th dose independent rect. 13 14
923 265.80 humidity 90 720 < th dose dependent sin 15 NA
954 265.94 wind 7 720 < th dose independent sin 16 NA
970 266.03 humidity 70 720 > th dose independent rect. 14 17
993 266.16 humidity 80 720 > th dose independent sin 20 NA