Os02g0326200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os02g0326200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.43 | 0.444 | 10.4 | -0.21 | 0.884 | 0.873 | 0.0924 | 2.34 | -0.666 | 17.5 | 70.48 | 6167 | -- | -- |
| 96.54 | 0.458 | 10.4 | -0.272 | 0.87 | 0.976 | 0.186 | -- | -0.729 | 17.1 | 71.51 | 6776 | -- | -- |
| 89.45 | 0.441 | 10.4 | -0.209 | 0.884 | 0.872 | -- | 2.35 | -0.665 | 17.5 | 70.43 | 6162 | -- | -- |
| 95.55 | 0.455 | 10.5 | -0.308 | 0.955 | 1.04 | -- | -- | -0.854 | 17.3 | 73.49 | 6901 | -- | -- |
| 127.32 | 0.526 | 10.4 | -0.22 | -- | 1.11 | -- | 2.13 | -0.708 | -- | 73 | 6299 | -- | -- |
| 112.14 | 0.496 | 10.4 | -0.392 | 0.948 | -- | 0.197 | -- | -0.566 | 17.6 | -- | -- | -- | -- |
| 112.24 | 0.496 | 10.4 | -0.393 | 0.949 | -- | -- | -- | -0.565 | 17.6 | -- | -- | -- | -- |
| 129.31 | 0.53 | 10.5 | -0.333 | -- | 1.25 | -- | -- | -0.951 | -- | 73 | 6326 | -- | -- |
| 97.69 | 0.46 | 10.5 | -- | 0.959 | 1.11 | -- | -- | -0.876 | 17.3 | 74.77 | 6901 | -- | -- |
| 159.04 | 0.589 | 10.4 | -0.423 | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
| 116.3 | 0.504 | 10.4 | -- | 0.956 | -- | -- | -- | -0.521 | 17.6 | -- | -- | -- | -- |
| 132.08 | 0.535 | 10.5 | -- | -- | 1.36 | -- | -- | -0.945 | -- | 73.01 | 6328 | -- | -- |
| 163.78 | 0.597 | 10.4 | -- | -- | -- | -- | -- | -0.541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 2 | 83.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 3 | 83.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 4 | 83.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 5 | 84.87 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 6 | 85.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 7 | 85.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 8 | 85.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 9 | 85.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 10 | 85.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 14 | 85.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 17 | 85.19 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 23 | 85.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 25 | 85.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 30 | 85.31 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 31 | 85.33 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 32 | 85.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 33 | 85.37 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 36 | 85.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 38 | 85.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 45 | 85.51 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 55 | 85.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 68 | 85.71 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 106 | 86.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 107 | 86.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 108 | 86.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 114 | 86.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 171 | 86.68 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 174 | 86.68 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 177 | 86.69 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 224 | 86.94 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 230 | 87.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 16 |
| 231 | 87.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 256 | 87.26 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 278 | 87.50 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 322 | 87.74 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 337 | 87.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 346 | 87.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 391 | 88.10 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 415 | 88.24 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 428 | 88.30 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 439 | 88.36 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 484 | 88.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 491 | 88.62 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 507 | 88.69 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 549 | 88.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 609 | 89.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 618 | 89.09 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 630 | 89.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 634 | 89.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 640 | 89.18 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 644 | 89.20 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 681 | 89.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 719 | 89.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 720 | 89.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 736 | 89.50 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 753 | 89.52 | humidity | 60.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 849 | 89.70 | wind | 1.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 868 | 89.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 884 | 89.80 | wind | 5.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 885 | 89.80 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 924 | 89.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 964 | 89.98 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 977 | 90.00 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 14 |