Os02g0326100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0326100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.9 | 0.621 | 8.95 | -3.51 | 0.426 | -2.7 | 1.33 | 1.03 | -0.575 | 6.76 | 21.18 | 1263 | 1.72 | -- |
| 175.89 | 0.618 | 8.98 | -3.81 | 0.407 | -2.77 | 0.993 | -- | -0.641 | 6.53 | 20.89 | 1246 | 1.48 | -- |
| 178.49 | 0.622 | 8.95 | -3.53 | 0.405 | -2.75 | -- | 0.959 | -0.564 | 5.86 | 21.13 | 1247 | 1.53 | -- |
| 178.36 | 0.622 | 9 | -3.77 | 0.275 | -2.8 | -- | -- | -0.692 | 5.24 | 20.87 | 1223 | 0.881 | -- |
| 180.36 | 0.625 | 8.98 | -3.58 | -- | -2.94 | -- | 0.806 | -0.624 | -- | 21.35 | 1163 | 0.652 | -- |
| 424.27 | 0.966 | 9.17 | -4.79 | 0.553 | -- | 1.46 | -- | -1.48 | 7.14 | -- | -- | -- | -- |
| 429.36 | 0.97 | 9.17 | -4.76 | 0.57 | -- | -- | -- | -1.49 | 6.5 | -- | -- | -- | -- |
| 179.95 | 0.625 | 9.01 | -3.76 | -- | -2.96 | -- | -- | -0.691 | -- | 20.73 | 1174 | 0.468 | -- |
| 284.72 | 0.786 | 8.78 | -- | 0.542 | -4.37 | -- | -- | 0.29 | 4.73 | 14.96 | 24367 | 0.518 | -- |
| 446.23 | 0.987 | 9.19 | -4.75 | -- | -- | -- | -- | -1.48 | -- | -- | -- | -- | -- |
| 1027.49 | 1.5 | 9.05 | -- | 0.512 | -- | -- | -- | -0.956 | 7.03 | -- | -- | -- | -- |
| 297.93 | 0.804 | 8.8 | -- | -- | -4.41 | -- | -- | 0.256 | -- | 14.4 | 24136 | 0.0762 | -- |
| 1041.31 | 1.51 | 9.07 | -- | -- | -- | -- | -- | -0.948 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 14 | 178.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 44 | 182.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 91 | 188.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 145 | 193.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 147 | 193.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 163 | 194.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 181 | 194.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 207 | 195.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 223 | 195.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 236 | 195.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 268 | 196.52 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 306 | 197.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 317 | 197.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 337 | 197.56 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 18 |
| 356 | 197.80 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 398 | 198.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 399 | 198.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 426 | 198.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 533 | 199.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 539 | 199.95 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 585 | 200.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 650 | 201.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 5 |