FiT-DB / Search/ Help/ Sample detail

Os02g0326000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0185) R2 : 0.497
β1 : 1.44 (0.0677) R2dD : 0.515 R2D : 0.471
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0395) R2dN8 : 0.0262 R2N8 : -0.0186
σ : 0.347
deviance : 55.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.19 0.271 11 1.38 0.521 3.22 -0.0284 8.75 0.258 18.7 15.7 6097 -- --
38.43 0.291 11.2 1.52 0.524 -0.716 -0.0751 -- 0.194 18.7 15.7 6097 -- --
33.1 0.268 11 1.36 0.527 3.28 -- 8.86 0.25 18.7 15.82 6353 -- --
33.94 0.271 11.2 1.78 0.522 -0.871 -- -- 0.266 18.7 15.58 6097 -- --
47.24 0.32 11 1.35 -- 3.28 -- 8.86 0.249 -- 15.9 5829 -- --
40.83 0.3 11.2 1.45 0.524 -- -0.068 -- 0.177 18.7 -- -- -- --
40.84 0.299 11.2 1.45 0.524 -- -- -- 0.176 18.7 -- -- -- --
48.14 0.323 11.2 1.8 -- -0.895 -- -- 0.267 -- 15.7 5881 -- --
52.46 0.337 11.3 -- 0.465 0.93 -- -- -0.213 17 21.7 47520 -- --
55.15 0.347 11.2 1.44 -- -- -- -- 0.166 -- -- -- -- --
96.14 0.459 11.3 -- 0.506 -- -- -- 0.0152 18.9 -- -- -- --
62.82 0.369 11.3 -- -- 1 -- -- -0.343 -- 22.08 47520 -- --
109.57 0.489 11.2 -- -- -- -- -- 0.00671 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.50 radiation 1 14400 > th dose independent rect. 8 5
3 30.59 radiation 1 14400 < th dose independent rect. 8 4
5 30.60 wind 1 43200 < th dose independent rect. 5 16
7 30.63 wind 1 43200 < th dose independent rect. 5 14
8 30.63 radiation 1 14400 < th dose dependent rect. 9 3
10 30.67 atmosphere 1015 43200 > th dose independent rect. 19 1
11 30.71 atmosphere 1015 43200 > th dose dependent rect. 13 5
13 30.71 atmosphere 1015 43200 > th dose dependent rect. 13 8
15 30.71 wind 1 43200 < th dose dependent rect. 6 13
17 30.74 atmosphere 1015 43200 > th dose dependent rect. 17 4
26 30.78 wind 1 43200 < th dose dependent rect. 9 1
33 30.83 atmosphere 1015 43200 > th dose dependent rect. 17 1
43 30.90 atmosphere 1015 43200 > th dose dependent rect. 14 1
53 30.93 wind 1 43200 > th dose independent rect. 5 14
65 30.97 atmosphere 1015 43200 < th dose independent rect. 17 3
72 31.02 wind 1 43200 < th dose dependent rect. 6 11
78 31.06 wind 1 43200 < th dose independent sin 0 NA
84 31.09 radiation 1 14400 < th dose dependent rect. 6 10
90 31.11 wind 1 43200 < th dose dependent rect. 6 15
94 31.15 wind 1 43200 < th dose dependent rect. 12 4
97 31.16 temperature 15 43200 < th dose independent rect. 24 1
99 31.17 wind 1 43200 > th dose independent rect. 13 3
102 31.18 temperature 15 43200 < th dose independent rect. 18 8
124 31.24 temperature 15 43200 > th dose independent rect. 18 8
130 31.24 temperature 15 43200 > th dose independent rect. 13 14
131 31.24 temperature 15 43200 < th dose independent rect. 13 14
147 31.26 temperature 15 43200 > th dose independent rect. 11 4
158 31.27 wind 1 43200 < th dose independent rect. 9 1
161 31.27 atmosphere 1015 43200 > th dose independent rect. 14 6
204 31.31 temperature 15 43200 > th dose independent sin 16 NA
205 31.31 temperature 15 43200 < th dose independent sin 15 NA
207 31.31 temperature 15 43200 < th dose independent rect. 21 1
225 31.33 temperature 15 43200 > th dose independent rect. 1 1
240 31.33 humidity 50 43200 > th dose dependent rect. 4 2
255 31.35 temperature 15 43200 < th dose independent rect. 13 1
279 31.36 temperature 15 43200 > th dose independent rect. 13 1
280 31.36 temperature 15 43200 > th dose independent rect. 21 2
282 31.36 wind 1 43200 < th dose independent rect. 13 3
320 31.37 temperature 15 43200 < th dose dependent rect. 14 13
327 31.38 temperature 15 43200 < th dose independent rect. 10 5
340 31.38 temperature 15 43200 < th dose dependent rect. 18 8
353 31.39 wind 1 43200 < th dose independent rect. 7 4
404 31.40 temperature 15 43200 < th dose independent rect. 18 21
440 31.41 temperature 15 43200 < th dose dependent sin 14 NA
517 31.43 humidity 50 43200 > th dose dependent rect. 1 5
545 31.44 temperature 15 43200 < th dose independent no NA NA
566 31.44 temperature 15 43200 < th dose independent rect. 21 23
567 31.44 temperature 15 43200 < th dose independent rect. 24 23
568 31.44 temperature 15 43200 < th dose dependent sin 10 NA
581 31.44 temperature 15 43200 < th dose dependent rect. 22 16
596 31.44 temperature 15 43200 < th dose dependent rect. 18 20
618 31.45 atmosphere 1015 43200 > th dose independent rect. 14 3
663 31.45 temperature 15 43200 < th dose dependent rect. 23 14
747 31.46 temperature 15 43200 < th dose dependent sin 7 NA
749 31.46 temperature 15 43200 < th dose dependent no NA NA
814 31.47 temperature 15 43200 > th dose independent rect. 17 22
820 31.47 temperature 15 43200 < th dose dependent rect. 24 8
832 31.48 temperature 15 43200 > th dose independent no NA NA
853 31.48 temperature 15 43200 > th dose independent rect. 21 23
854 31.48 temperature 15 43200 > th dose independent rect. 24 23
875 31.49 temperature 15 43200 < th dose independent rect. 24 15
940 31.50 temperature 15 43200 < th dose dependent rect. 21 2
983 31.51 wind 1 43200 < th dose dependent sin 23 NA
985 31.51 temperature 15 43200 < th dose dependent rect. 1 2