Os02g0323900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0323900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.79 | 0.844 | 3.13 | 0.254 | 0.33 | 5.13 | 0.0887 | 8.71 | -0.00595 | 6.5 | 8.5 | 108 | -- | -- |
| 328.62 | 0.844 | 3.1 | 0.228 | 0.41 | 3.56 | 0.493 | -- | 0.049 | 5.55 | 8.7 | 120 | -- | -- |
| 322.68 | 0.837 | 3.13 | 0.255 | 0.332 | 5.21 | -- | 8.79 | -0.00538 | 6.45 | 8.51 | 108 | -- | -- |
| 325.76 | 0.841 | 3.07 | 0.185 | 0.385 | 3.42 | -- | -- | 0.0287 | 6.32 | 8.7 | 138 | -- | -- |
| 328.34 | 0.844 | 3.14 | 0.259 | -- | 5.15 | -- | 8.96 | -0.000438 | -- | 8.5 | 108 | -- | -- |
| 351.98 | 0.88 | 3.11 | -0.0184 | 0.263 | -- | 0.475 | -- | -0.0763 | 7.79 | -- | -- | -- | -- |
| 352.63 | 0.879 | 3.11 | -0.00618 | 0.263 | -- | -- | -- | -0.077 | 7.75 | -- | -- | -- | -- |
| 331.36 | 0.848 | 3.08 | 0.201 | -- | 3.04 | -- | -- | 0.0456 | -- | 8.7 | 138 | -- | -- |
| 326.33 | 0.841 | 3.09 | -- | 0.338 | 3.08 | -- | -- | -0.00266 | 6.56 | 8.704 | 138 | -- | -- |
| 356.37 | 0.882 | 3.12 | -0.0029 | -- | -- | -- | -- | -0.0732 | -- | -- | -- | -- | -- |
| 352.63 | 0.878 | 3.11 | -- | 0.263 | -- | -- | -- | -0.0763 | 7.76 | -- | -- | -- | -- |
| 332.19 | 0.849 | 3.1 | -- | -- | 2.93 | -- | -- | -0.00927 | -- | 8.8 | 138 | -- | -- |
| 356.37 | 0.881 | 3.12 | -- | -- | -- | -- | -- | -0.0729 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 316.10 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 5 |
| 5 | 318.44 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 39 | 321.09 | wind | 9 | 10 | > th | dose dependent | sin | 18 | NA |
| 60 | 323.22 | wind | 7 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 123 | 324.56 | wind | 9 | 10 | < th | dose independent | sin | 18 | NA |
| 244 | 325.29 | wind | 9 | 270 | > th | dose dependent | sin | 2 | NA |
| 251 | 325.46 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 256 | 325.55 | wind | 9 | 10 | > th | dose dependent | no | NA | NA |
| 529 | 326.20 | wind | 9 | 270 | > th | dose independent | sin | 2 | NA |
| 543 | 326.35 | wind | 9 | 270 | < th | dose independent | sin | 1 | NA |
| 548 | 326.42 | wind | 7 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 550 | 326.43 | wind | 9 | 270 | < th | dose independent | sin | 3 | NA |
| 555 | 326.54 | wind | 9 | 30 | > th | dose independent | sin | 19 | NA |
| 570 | 326.81 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 1 |
| 847 | 328.22 | wind | 9 | 90 | > th | dose independent | rect. | 15 | 23 |