Os02g0322500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0322500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.12 | 0.316 | 9.55 | 1.73 | 0.598 | 0.666 | -0.411 | -2.34 | 0.184 | 17.8 | 22.82 | 300 | -- | -- |
| 46.9 | 0.319 | 9.58 | 1.52 | 0.599 | 1.5 | 0.122 | -- | 0.123 | 17.4 | 20.86 | 139 | -- | -- |
| 45.46 | 0.314 | 9.56 | 1.71 | 0.601 | 0.699 | -- | -2.13 | 0.172 | 17.7 | 22.6 | 286 | -- | -- |
| 46.94 | 0.319 | 9.59 | 1.52 | 0.602 | 1.49 | -- | -- | 0.119 | 17.4 | 20.88 | 139 | -- | -- |
| 63.05 | 0.372 | 9.56 | 1.54 | -- | 0.726 | -- | -1.86 | 0.105 | -- | 21.4 | 260 | -- | -- |
| 63.37 | 0.373 | 9.61 | 1.26 | 0.542 | -- | 0.0922 | -- | 0.00247 | 18 | -- | -- | -- | -- |
| 63.39 | 0.373 | 9.61 | 1.26 | 0.542 | -- | -- | -- | 0.00279 | 18 | -- | -- | -- | -- |
| 63.35 | 0.371 | 9.58 | 1.72 | -- | 1.56 | -- | -- | 0.127 | -- | 17.3 | 5869 | -- | -- |
| 101.29 | 0.471 | 9.64 | -- | 0.54 | 0.637 | -- | -- | -0.096 | 17.7 | 21.07 | 133 | -- | -- |
| 78.63 | 0.414 | 9.61 | 1.24 | -- | -- | -- | -- | -0.00956 | -- | -- | -- | -- | -- |
| 104.94 | 0.479 | 9.65 | -- | 0.524 | -- | -- | -- | -0.137 | 18.1 | -- | -- | -- | -- |
| 116.29 | 0.502 | 9.62 | -- | -- | 0.595 | -- | -- | -0.105 | -- | 20.8 | 11 | -- | -- |
| 119.17 | 0.51 | 9.64 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 2 | 42.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 42.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 21 | 43.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 27 | 43.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 40 | 43.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 85 | 43.72 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 102 | 43.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 165 | 44.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 204 | 44.16 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 257 | 44.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 264 | 44.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 284 | 44.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 292 | 44.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 316 | 44.78 | humidity | 90 | 14400 | < th | dose independent | sin | 7 | NA |
| 338 | 44.86 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 349 | 44.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 368 | 44.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 454 | 45.27 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 468 | 45.34 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 23 |
| 490 | 45.39 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 22 |
| 508 | 45.44 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 23 |
| 550 | 45.55 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 554 | 45.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 558 | 45.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 580 | 45.62 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 587 | 45.64 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 602 | 45.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 616 | 45.69 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 619 | 45.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 623 | 45.70 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 23 |
| 636 | 45.75 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 641 | 45.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 724 | 45.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 736 | 45.98 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 738 | 45.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 740 | 45.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 757 | 46.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 773 | 46.06 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 793 | 46.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 810 | 46.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 841 | 46.16 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 849 | 46.18 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 858 | 46.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 917 | 46.31 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |