Os02g0319400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0319400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.75 | 0.533 | 7.69 | 1.2 | 1.66 | -0.152 | 0.054 | 1.7 | -0.0328 | 21.6 | 20 | 218 | -- | -- |
| 138.35 | 0.552 | 7.73 | 0.936 | 1.64 | -0.341 | -0.0772 | -- | -0.0825 | 21.5 | 20.1 | 143 | -- | -- |
| 128.75 | 0.528 | 7.69 | 1.19 | 1.66 | -0.154 | -- | 1.69 | -0.0335 | 21.6 | 20.03 | 214 | -- | -- |
| 137.75 | 0.547 | 7.73 | 1 | 1.66 | -0.488 | -- | -- | -0.0788 | 21.5 | 19 | 148 | -- | -- |
| 284.52 | 0.79 | 7.65 | 1.23 | -- | -0.604 | -- | 1.17 | 0.0169 | -- | 20.03 | 214 | -- | -- |
| 143.06 | 0.561 | 7.74 | 0.842 | 1.68 | -- | -0.129 | -- | -0.146 | 21.7 | -- | -- | -- | -- |
| 143.12 | 0.56 | 7.74 | 0.847 | 1.69 | -- | -- | -- | -0.146 | 21.7 | -- | -- | -- | -- |
| 286.08 | 0.791 | 7.66 | 1.03 | -- | -0.622 | -- | -- | 0.0284 | -- | 22.19 | 3 | -- | -- |
| 160.39 | 0.593 | 7.76 | -- | 1.66 | -0.191 | -- | -- | -0.209 | 21.6 | 20.59 | 122 | -- | -- |
| 311.58 | 0.825 | 7.7 | 0.861 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 162.03 | 0.595 | 7.76 | -- | 1.69 | -- | -- | -- | -0.24 | 21.7 | -- | -- | -- | -- |
| 313.2 | 0.827 | 7.69 | -- | -- | -0.515 | -- | -- | -0.113 | -- | 22.1 | 4 | -- | -- |
| 331.16 | 0.849 | 7.72 | -- | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.74 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 17 | 121.97 | wind | 7 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 18 | 122.12 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 19 | 122.17 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 21 | 122.32 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 25 | 122.45 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 26 | 122.48 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 27 | 122.49 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 29 | 122.52 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 34 | 122.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 122.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 38 | 122.65 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 44 | 122.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 47 | 122.78 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 50 | 122.81 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 55 | 122.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 22 |
| 56 | 122.85 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 60 | 122.87 | wind | 5 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 61 | 122.88 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 62 | 122.88 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 84 | 123.15 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 89 | 123.18 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 94 | 123.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 97 | 123.25 | wind | 7 | 14400 | > th | dose dependent | rect. | 22 | 14 |
| 108 | 123.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 18 |
| 112 | 123.35 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 118 | 123.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 125 | 123.41 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 128 | 123.44 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 140 | 123.47 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 149 | 123.52 | wind | 5 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 151 | 123.53 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 152 | 123.53 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 161 | 123.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 20 |
| 165 | 123.59 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 170 | 123.62 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 185 | 123.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 20 |
| 186 | 123.69 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 187 | 123.69 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 198 | 123.72 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 212 | 123.76 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 242 | 123.84 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 246 | 123.84 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 252 | 123.86 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 256 | 123.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 262 | 123.88 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 273 | 123.90 | wind | 5 | 43200 | < th | dose dependent | rect. | 22 | 13 |
| 288 | 123.93 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 296 | 123.94 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 308 | 123.96 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 324 | 123.98 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 348 | 124.02 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 355 | 124.03 | wind | 3 | 43200 | > th | dose independent | sin | 8 | NA |
| 376 | 124.06 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 23 |
| 400 | 124.10 | wind | 5 | 43200 | < th | dose dependent | sin | 8 | NA |
| 420 | 124.14 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 442 | 124.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 10 |
| 444 | 124.16 | wind | 3 | 43200 | < th | dose independent | sin | 8 | NA |
| 453 | 124.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 472 | 124.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 478 | 124.19 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 605 | 124.35 | wind | 1 | 43200 | < th | dose dependent | sin | 2 | NA |
| 606 | 124.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 637 | 124.39 | wind | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 659 | 124.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 703 | 124.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 774 | 124.56 | wind | 5 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 858 | 124.67 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 916 | 124.74 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 919 | 124.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 14 |
| 926 | 124.76 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 1 |