Os02g0317800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0317800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.67 | 0.208 | 13.5 | -0.202 | 0.21 | 0.505 | 0.689 | -1.04 | 0.222 | 2.17 | 9.334 | 968 | -- | -- |
| 20.45 | 0.211 | 13.5 | -0.00413 | 0.224 | 0.521 | 0.569 | -- | 0.267 | 2.89 | 9.478 | 867 | -- | -- |
| 21.02 | 0.214 | 13.5 | -0.253 | 0.276 | 0.457 | -- | -1.05 | 0.208 | 1.86 | 8.088 | 1699 | -- | -- |
| 21.51 | 0.216 | 13.5 | -0.019 | 0.241 | 0.534 | -- | -- | 0.269 | 3.27 | 9.372 | 831 | -- | -- |
| 23.67 | 0.227 | 13.5 | -0.166 | -- | 0.603 | -- | -0.618 | 0.224 | -- | 6.278 | 1051 | -- | -- |
| 24.14 | 0.23 | 13.5 | 0.14 | 0.273 | -- | 0.543 | -- | 0.356 | 1.65 | -- | -- | -- | -- |
| 25.32 | 0.236 | 13.5 | 0.123 | 0.273 | -- | -- | -- | 0.353 | 1.68 | -- | -- | -- | -- |
| 23.99 | 0.228 | 13.5 | -0.0394 | -- | 0.596 | -- | -- | 0.258 | -- | 8.786 | 1037 | -- | -- |
| 21.51 | 0.216 | 13.5 | -- | 0.241 | 0.526 | -- | -- | 0.272 | 3.25 | 9.083 | 828 | -- | -- |
| 29.87 | 0.255 | 13.5 | 0.134 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 25.71 | 0.237 | 13.5 | -- | 0.276 | -- | -- | -- | 0.339 | 1.69 | -- | -- | -- | -- |
| 24.03 | 0.228 | 13.5 | -- | -- | 0.58 | -- | -- | 0.265 | -- | 6.848 | 1034 | -- | -- |
| 30.34 | 0.257 | 13.5 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 14 | 18.63 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 15 | 18.64 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 18 | 18.67 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 39 | 18.87 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 43 | 18.88 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 44 | 18.89 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 68 | 18.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 75 | 18.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 77 | 18.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 79 | 18.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 99 | 18.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 117 | 19.00 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 127 | 19.02 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 128 | 19.02 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |
| 141 | 19.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 152 | 19.05 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 159 | 19.05 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 164 | 19.06 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 182 | 19.08 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 192 | 19.09 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 248 | 19.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 251 | 19.13 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 270 | 19.14 | wind | 3 | 43200 | > th | dose dependent | sin | 17 | NA |
| 299 | 19.16 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 306 | 19.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 359 | 19.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 377 | 19.19 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 378 | 19.19 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 394 | 19.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 415 | 19.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 417 | 19.21 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 422 | 19.21 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 438 | 19.22 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 445 | 19.22 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 455 | 19.23 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 503 | 19.24 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 506 | 19.24 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 529 | 19.25 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 547 | 19.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 622 | 19.28 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 628 | 19.28 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 818 | 19.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 827 | 19.33 | wind | 9 | 43200 | < th | dose dependent | sin | 19 | NA |
| 879 | 19.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 911 | 19.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |