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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0314400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.037) R2 : 0.00747
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0779) R2dN8 : 0.00965 R2N8 : 0.00747
σ : 0.697
deviance : 222.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.76 0.656 2.84 0.242 0.0906 3.71 -0.109 4.26 -0.0677 2.69 0.2701 691 14.1 2.15
199.21 0.657 2.83 0.261 0.0701 2.57 -0.0285 -- -0.0703 1.68 0.2809 703 14.1 2.17
194.79 0.65 2.84 0.246 0.0911 3.73 -- 4.25 -0.0666 3.05 0.2735 689 14.1 2.16
198.63 0.656 2.82 0.303 0.0914 2.56 -- -- -0.0643 1.68 0.3183 588 14 2.2
195.27 0.651 2.84 0.251 -- 3.71 -- 4.14 -0.0643 -- 0.273 687 14.1 2.15
220.12 0.696 2.85 0.195 0.156 -- -0.185 -- -0.124 23.4 -- -- -- --
220.24 0.695 2.85 0.203 0.159 -- -- -- -0.123 22.9 -- -- -- --
198.94 0.657 2.83 0.265 -- 2.6 -- -- -0.0688 -- 0.3084 587 14 2.32
200.34 0.659 2.84 -- 0.0861 2.52 -- -- -0.101 1.62 0.3406 588 14 2.39
221.81 0.696 2.84 0.207 -- -- -- -- -0.121 -- -- -- -- --
221.33 0.696 2.85 -- 0.16 -- -- -- -0.145 23 -- -- -- --
190.04 0.642 2.82 -- -- 2.23 -- -- -0.0473 -- 0.4038 497 14.4 2.18
222.93 0.697 2.85 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.60 humidity 90.0 720 > th dose independent rect. 13 2
3 196.07 precipitation 0.1 720 > th dose independent rect. 14 2
4 196.07 precipitation 0.1 720 > th dose dependent rect. 14 2
13 197.82 humidity 90.0 720 > th dose dependent rect. 13 2
16 198.11 atmosphere 1005.0 10 < th dose dependent rect. 18 5
19 198.66 humidity 90.0 90 > th dose independent rect. 14 1
22 198.66 humidity 90.0 90 > th dose dependent rect. 14 1
27 198.76 radiation 1.0 10 < th dose independent rect. 13 3
34 198.77 radiation 1.0 10 < th dose independent rect. 15 1
101 200.62 precipitation 0.1 1440 < th dose independent rect. 14 1
102 200.62 precipitation 0.1 1440 < th dose dependent rect. 14 1
106 200.95 humidity 90.0 1440 < th dose independent rect. 13 2
107 201.01 radiation 1.0 10 < th dose dependent rect. 15 1
109 201.11 radiation 1.0 10 < th dose independent rect. 5 12
114 201.29 wind 1.0 720 < th dose independent rect. 16 2
122 201.46 radiation 10.0 90 < th dose dependent rect. 14 1
128 201.56 wind 3.0 270 < th dose independent rect. 18 1
172 203.95 temperature 25.0 90 < th dose dependent rect. 14 1
177 204.25 radiation 1.0 10 < th dose dependent rect. 5 12
187 204.64 wind 3.0 720 < th dose dependent rect. 16 1
217 205.30 wind 3.0 270 < th dose dependent rect. 18 1
273 205.92 wind 3.0 720 < th dose dependent rect. 16 3
289 206.26 precipitation 0.1 720 > th dose independent rect. 8 8
396 207.65 precipitation 0.1 720 > th dose dependent rect. 8 8
399 207.73 temperature 25.0 10 < th dose independent rect. 15 1
455 208.32 wind 3.0 10 < th dose dependent rect. 12 8
499 208.73 wind 3.0 720 < th dose dependent rect. 14 5
525 208.94 radiation 30.0 43200 > th dose independent rect. 14 3
541 208.94 atmosphere 1005.0 10 < th dose dependent rect. 22 1
552 209.00 radiation 10.0 43200 > th dose independent rect. 16 1
564 209.07 humidity 70.0 43200 < th dose independent rect. 16 1
570 209.13 radiation 10.0 43200 < th dose dependent rect. 16 1
584 209.19 wind 1.0 1440 < th dose dependent rect. 10 2
586 209.20 wind 3.0 270 < th dose independent rect. 13 7
598 209.28 radiation 20.0 43200 < th dose dependent rect. 14 7
602 209.28 radiation 20.0 43200 < th dose dependent rect. 14 12
605 209.29 radiation 20.0 43200 < th dose dependent rect. 14 5
613 209.30 wind 3.0 90 < th dose dependent rect. 12 8
618 209.32 radiation 10.0 43200 > th dose independent rect. 16 14
654 209.39 humidity 70.0 43200 > th dose independent rect. 16 1
674 209.45 wind 1.0 1440 < th dose independent rect. 11 1
703 209.52 radiation 10.0 43200 < th dose dependent sin 15 NA
742 209.56 precipitation 0.1 1440 < th dose independent rect. 11 4
745 209.56 precipitation 0.1 1440 < th dose dependent rect. 11 4
782 209.63 wind 3.0 720 < th dose dependent rect. 10 10
798 209.66 radiation 1.0 43200 > th dose dependent rect. 16 1
830 209.67 radiation 10.0 720 < th dose independent rect. 11 17
938 209.83 humidity 90.0 720 < th dose dependent rect. 13 3
964 209.90 wind 1.0 720 < th dose independent rect. 10 9
981 209.91 radiation 30.0 43200 > th dose independent sin 14 NA