Os02g0313500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CHCH domain containing protein.
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Os02g0313500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CHCH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.19 | 0.484 | 7.92 | -0.338 | 1.12 | 1.09 | -1.17 | -1.49 | -0.286 | 16.4 | 29.51 | 4219 | -- | -- |
| 106.91 | 0.482 | 7.96 | -0.581 | 1.09 | 0.996 | -1.18 | -- | -0.295 | 16.3 | 29.49 | 4320 | -- | -- |
| 109.93 | 0.488 | 7.92 | -0.323 | 1.12 | 1.09 | -- | -1.63 | -0.286 | 16.4 | 29.54 | 4218 | -- | -- |
| 109.55 | 0.487 | 7.96 | -0.649 | 1.18 | 0.838 | -- | -- | -0.313 | 16.4 | 29.4 | 4706 | -- | -- |
| 176.19 | 0.618 | 7.91 | -0.341 | -- | 1.19 | -- | -1.58 | -0.306 | -- | 29.6 | 4074 | -- | -- |
| 134.02 | 0.543 | 7.95 | -0.881 | 1.17 | -- | -1.02 | -- | -0.281 | 16.2 | -- | -- | -- | -- |
| 136.92 | 0.548 | 7.95 | -0.891 | 1.16 | -- | -- | -- | -0.286 | 16.2 | -- | -- | -- | -- |
| 175.25 | 0.617 | 7.93 | -0.618 | -- | 0.838 | -- | -- | -0.254 | -- | 29.3 | 2744 | -- | -- |
| 120.01 | 0.51 | 7.95 | -- | 1.18 | 0.964 | -- | -- | -0.253 | 16.4 | 29.4 | 4662 | -- | -- |
| 210.17 | 0.677 | 7.94 | -0.938 | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
| 157.85 | 0.588 | 7.93 | -- | 1.18 | -- | -- | -- | -0.187 | 16.2 | -- | -- | -- | -- |
| 186.2 | 0.636 | 7.92 | -- | -- | 0.95 | -- | -- | -0.231 | -- | 29.5 | 2788 | -- | -- |
| 233.37 | 0.713 | 7.92 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 3 | 104.88 | humidity | 70 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 4 | 104.91 | humidity | 70 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 15 | 105.33 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 16 | 105.34 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 19 | 105.37 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 21 | 105.38 | humidity | 70 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 27 | 105.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 28 | 106.07 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 29 | 106.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 31 | 106.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 33 | 106.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 40 | 106.37 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 45 | 106.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 46 | 106.43 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 50 | 106.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 52 | 106.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 54 | 106.51 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 57 | 106.54 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 64 | 106.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 67 | 106.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 75 | 106.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 77 | 106.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 96 | 106.61 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 140 | 106.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 144 | 106.65 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 146 | 106.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 147 | 106.66 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 163 | 106.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 171 | 106.68 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 189 | 106.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 318 | 106.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 19 |
| 332 | 106.97 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 351 | 106.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 441 | 107.03 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 636 | 107.12 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 20 |
| 748 | 107.28 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 823 | 107.34 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 878 | 107.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 882 | 107.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 888 | 107.43 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 937 | 107.50 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 992 | 107.59 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 16 | 1 |