Os02g0310400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0310400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.31 | 0.532 | 8.71 | -0.789 | 0.428 | 1.22 | 0.826 | -1.14 | -0.253 | 8.85 | 16.26 | 651 | -- | -- |
| 129.17 | 0.529 | 8.68 | -0.583 | 0.431 | 1.21 | 1.07 | -- | -0.196 | 8.8 | 16 | 648 | -- | -- |
| 130.45 | 0.532 | 8.71 | -0.791 | 0.414 | 1.22 | -- | -1.31 | -0.268 | 8.73 | 16.38 | 660 | -- | -- |
| 132.98 | 0.537 | 8.68 | -0.54 | 0.422 | 1.19 | -- | -- | -0.192 | 8.65 | 15.87 | 640 | -- | -- |
| 136.2 | 0.544 | 8.71 | -0.706 | -- | 0.899 | -- | -0.662 | -0.219 | -- | 16.9 | 1504 | -- | -- |
| 149.23 | 0.573 | 8.65 | -0.273 | 0.135 | -- | 0.859 | -- | -0.00216 | 9.97 | -- | -- | -- | -- |
| 152.07 | 0.577 | 8.65 | -0.239 | 0.131 | -- | -- | -- | 0.000322 | 10.7 | -- | -- | -- | -- |
| 136.53 | 0.544 | 8.69 | -0.527 | -- | 0.742 | -- | -- | -0.195 | -- | 19.9 | 1549 | -- | -- |
| 139.76 | 0.551 | 8.66 | -- | 0.366 | 0.944 | -- | -- | -0.102 | 8.69 | 16.19 | 612 | -- | -- |
| 153.13 | 0.578 | 8.65 | -0.241 | -- | -- | -- | -- | -0.00043 | -- | -- | -- | -- | -- |
| 153.57 | 0.58 | 8.64 | -- | 0.133 | -- | -- | -- | 0.0269 | 10.9 | -- | -- | -- | -- |
| 142.71 | 0.556 | 8.67 | -- | -- | 0.577 | -- | -- | -0.0865 | -- | 20.7 | 1561 | -- | -- |
| 154.67 | 0.58 | 8.64 | -- | -- | -- | -- | -- | 0.0263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 9 | 119.41 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 17 | 120.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 31 | 120.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 56 | 121.30 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 122 | 122.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 140 | 122.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 421 | 125.36 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 492 | 125.86 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 514 | 126.00 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 607 | 126.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 644 | 126.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 698 | 127.01 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 11 |
| 757 | 127.30 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 765 | 127.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 841 | 127.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 851 | 127.67 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 12 |
| 873 | 127.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 895 | 127.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 938 | 127.97 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 980 | 128.12 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 985 | 128.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 993 | 128.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 1 |