Os02g0307800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0307800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.21 | 0.53 | 10.5 | 0.257 | 1.81 | 1.11 | -0.74 | 3.93 | -0.537 | 19.6 | 31.41 | 123 | -- | -- |
| 137.06 | 0.545 | 10.4 | 0.198 | 1.77 | 0.812 | -1.3 | -- | -0.523 | 20.1 | 3.828 | 175 | -- | -- |
| 128.65 | 0.528 | 10.5 | 0.266 | 1.81 | 1.12 | -- | 4.05 | -0.539 | 19.6 | 30.33 | 121 | -- | -- |
| 141.53 | 0.554 | 10.4 | 0.262 | 1.8 | 0.765 | -- | -- | -0.532 | 20 | 4.897 | 175 | -- | -- |
| 212.36 | 0.679 | 10.4 | 0.388 | -- | 2.08 | -- | 1.78 | -0.749 | -- | -0.008481 | 799 | -- | -- |
| 147.63 | 0.57 | 10.4 | 0.254 | 1.8 | -- | -1.05 | -- | -0.487 | 19.1 | -- | -- | -- | -- |
| 150.49 | 0.574 | 10.4 | 0.277 | 1.8 | -- | -- | -- | -0.489 | 19.1 | -- | -- | -- | -- |
| 199.47 | 0.658 | 10.4 | 0.133 | -- | 1.82 | -- | -- | -0.711 | -- | -0.2627 | 806 | -- | -- |
| 143.34 | 0.558 | 10.4 | -- | 1.79 | 0.764 | -- | -- | -0.556 | 20 | 4.69 | 175 | -- | -- |
| 321.09 | 0.837 | 10.4 | 0.242 | -- | -- | -- | -- | -0.522 | -- | -- | -- | -- | -- |
| 152.51 | 0.578 | 10.4 | -- | 1.8 | -- | -- | -- | -0.52 | 19.1 | -- | -- | -- | -- |
| 199.93 | 0.659 | 10.4 | -- | -- | 1.83 | -- | -- | -0.728 | -- | -0.6458 | 810 | -- | -- |
| 322.63 | 0.838 | 10.4 | -- | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 3 | 120.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 27 | 123.53 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 40 | 124.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 56 | 124.48 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 67 | 124.76 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 113 | 125.64 | radiation | 40 | 270 | > th | dose dependent | sin | 11 | NA |
| 114 | 125.65 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 15 |
| 123 | 125.80 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 128 | 125.86 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 136 | 125.96 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 160 | 126.01 | radiation | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 172 | 126.14 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 178 | 126.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 186 | 126.31 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 204 | 126.44 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 225 | 126.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 252 | 126.63 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 267 | 126.72 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 268 | 126.73 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 2 |
| 302 | 126.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 307 | 126.90 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 325 | 127.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 338 | 127.13 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 359 | 127.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 364 | 127.32 | temperature | 15 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 380 | 127.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 382 | 127.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 396 | 127.54 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 410 | 127.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 425 | 127.79 | radiation | 40 | 270 | < th | dose independent | sin | 7 | NA |
| 436 | 127.84 | temperature | 10 | 90 | > th | dose dependent | rect. | 18 | 14 |
| 439 | 127.87 | radiation | 40 | 90 | > th | dose independent | sin | 5 | NA |
| 450 | 127.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 569 | 128.20 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 23 |
| 574 | 128.21 | radiation | 30 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 579 | 128.25 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 589 | 128.31 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 594 | 128.33 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 595 | 128.33 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 887 | 128.70 | radiation | 40 | 90 | < th | dose independent | rect. | 13 | 23 |
| 915 | 128.74 | radiation | 40 | 90 | < th | dose independent | no | NA | NA |
| 921 | 128.77 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 23 |
| 981 | 128.88 | radiation | 40 | 90 | > th | dose independent | no | NA | NA |