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Os02g0306600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0169) R2 : 0.478
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.656 (0.0403) R2dC : 0.304 R2C : 0.259
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.434 (0.0356) R2dN8 : 0.219 R2N8 : 0.173
σ : 0.319
deviance : 46.62
__
_____
C
peak time of C : 23.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.39 0.232 11.7 0.323 0.765 -0.927 0.195 0.194 0.293 0.468 25.7 196 -- --
24.43 0.23 11.7 0.349 0.772 -0.943 0.242 -- 0.299 0.483 25.7 190 -- --
24.53 0.231 11.7 0.304 0.769 -0.915 -- 0.298 0.289 0.427 25.71 190 -- --
24.67 0.231 11.7 0.347 0.768 -0.94 -- -- 0.299 0.45 25.63 190 -- --
41.59 0.3 11.7 0.221 -- -1.15 -- 0.307 0.26 -- 28.98 883 -- --
37.4 0.287 11.7 0.594 0.65 -- 0.196 -- 0.5 23.7 -- -- -- --
37.57 0.287 11.7 0.586 0.649 -- -- -- 0.499 23.7 -- -- -- --
41.74 0.301 11.7 0.265 -- -1.18 -- -- 0.257 -- 28.75 892 -- --
27.5 0.244 11.7 -- 0.782 -1.08 -- -- 0.234 0.569 25.64 204 -- --
64.09 0.374 11.6 0.605 -- -- -- -- 0.507 -- -- -- -- --
46.62 0.319 11.7 -- 0.656 -- -- -- 0.434 23.8 -- -- -- --
43.37 0.307 11.7 -- -- -1.29 -- -- 0.207 -- 28.7 899 -- --
73.74 0.401 11.7 -- -- -- -- -- 0.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.66 temperature 25 270 < th dose dependent rect. 6 23
2 24.69 temperature 25 270 < th dose dependent rect. 4 23
3 24.72 temperature 25 270 < th dose dependent rect. 12 23
5 24.73 temperature 25 270 < th dose dependent rect. 8 23
6 24.74 temperature 25 270 < th dose dependent rect. 10 23
12 24.81 temperature 25 270 < th dose dependent rect. 15 23
13 24.82 temperature 25 270 < th dose dependent no NA NA
57 25.10 temperature 25 90 < th dose dependent rect. 21 23
59 25.12 temperature 25 270 < th dose dependent rect. 19 23
85 25.32 temperature 25 1440 < th dose dependent rect. 21 1
93 25.33 temperature 25 30 < th dose dependent rect. 23 23
126 25.51 temperature 15 270 > th dose dependent rect. 13 23
127 25.51 temperature 25 270 < th dose dependent rect. 23 23
129 25.52 temperature 15 270 > th dose dependent rect. 6 23
210 25.78 temperature 15 270 > th dose dependent no NA NA
269 25.93 temperature 25 1440 < th dose dependent rect. 17 12
285 25.96 temperature 15 270 > th dose dependent rect. 20 23
310 26.02 temperature 25 1440 < th dose dependent rect. 17 19
321 26.05 temperature 10 1440 > th dose dependent rect. 21 2
366 26.12 temperature 25 1440 < th dose dependent sin 12 NA
381 26.14 temperature 15 1440 > th dose dependent rect. 21 4
389 26.15 temperature 15 1440 > th dose dependent rect. 20 9
441 26.20 temperature 10 1440 > th dose dependent rect. 4 1
449 26.20 temperature 20 720 > th dose dependent rect. 15 21
510 26.26 temperature 25 1440 < th dose dependent rect. 4 1
675 26.42 temperature 25 270 < th dose dependent sin 19 NA
707 26.44 temperature 25 1440 < th dose dependent rect. 8 22
813 26.51 temperature 25 1440 < th dose dependent no NA NA
881 26.54 temperature 25 1440 < th dose dependent rect. 2 23
882 26.54 temperature 25 1440 < th dose dependent rect. 4 23
948 26.58 temperature 15 1440 > th dose dependent sin 11 NA