Os02g0304800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0304800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.07 | 0.373 | 7.22 | 0.0569 | 0.286 | -0.614 | 0.275 | -2.45 | 0.0545 | 5.36 | 68 | 5437 | -- | -- |
| 71.24 | 0.393 | 7.22 | 0.11 | 0.279 | -0.785 | 0.328 | -- | 0.0992 | 5.58 | 68.81 | 5451 | -- | -- |
| 63.16 | 0.37 | 7.22 | 0.059 | 0.28 | -0.615 | -- | -2.51 | 0.0529 | 4.92 | 68 | 5360 | -- | -- |
| 70.59 | 0.391 | 7.21 | 0.165 | 0.262 | -0.752 | -- | -- | 0.0968 | 4.54 | 69 | 3999 | -- | -- |
| 66.03 | 0.378 | 7.21 | 0.00268 | -- | -0.661 | -- | -2.39 | 0.103 | -- | 68.22 | 6417 | -- | -- |
| 80.01 | 0.419 | 7.22 | 0.127 | 0.257 | -- | 0.596 | -- | 0.06 | 6.88 | -- | -- | -- | -- |
| 80.59 | 0.42 | 7.23 | 0.135 | 0.272 | -- | -- | -- | 0.0571 | 5.84 | -- | -- | -- | -- |
| 73.33 | 0.399 | 7.22 | 0.13 | -- | -0.798 | -- | -- | 0.0937 | -- | 68.35 | 4803 | -- | -- |
| 71.06 | 0.393 | 7.23 | -- | 0.289 | -0.761 | -- | -- | 0.0543 | 4.63 | 68.52 | 3997 | -- | -- |
| 84.44 | 0.429 | 7.23 | 0.143 | -- | -- | -- | -- | 0.0634 | -- | -- | -- | -- | -- |
| 81.07 | 0.421 | 7.23 | -- | 0.275 | -- | -- | -- | 0.042 | 5.82 | -- | -- | -- | -- |
| 73.77 | 0.4 | 7.23 | -- | -- | -0.803 | -- | -- | 0.0796 | -- | 68.01 | 4803 | -- | -- |
| 84.98 | 0.43 | 7.23 | -- | -- | -- | -- | -- | 0.0475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.92 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 2 | 61.23 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 11 | 61.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 13 | 61.74 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 14 | 61.75 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 33 | 62.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 35 | 62.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 42 | 62.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 55 | 62.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 59 | 62.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 66 | 62.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 71 | 62.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 72 | 62.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 79 | 62.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 82 | 62.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 85 | 62.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 17 |
| 86 | 62.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 88 | 62.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 89 | 62.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 19 |
| 90 | 62.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 19 |
| 94 | 62.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 19 |
| 100 | 62.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 102 | 62.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 104 | 62.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 105 | 62.89 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 106 | 62.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 109 | 62.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 113 | 62.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 133 | 63.02 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 135 | 63.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 147 | 63.07 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 149 | 63.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 151 | 63.08 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 153 | 63.08 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 154 | 63.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 160 | 63.10 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 163 | 63.10 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 185 | 63.22 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 194 | 63.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 196 | 63.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 199 | 63.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 202 | 63.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 207 | 63.28 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 222 | 63.33 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 240 | 63.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 245 | 63.40 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 251 | 63.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 253 | 63.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 255 | 63.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 256 | 63.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 257 | 63.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 267 | 63.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 269 | 63.50 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 271 | 63.50 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 282 | 63.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 284 | 63.53 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 285 | 63.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 290 | 63.54 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 303 | 63.57 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 315 | 63.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 335 | 63.66 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 352 | 63.72 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 379 | 63.79 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 384 | 63.82 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 402 | 63.88 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 403 | 63.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 435 | 64.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 438 | 64.01 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 439 | 64.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 441 | 64.02 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 446 | 64.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 460 | 64.06 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 529 | 64.24 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 609 | 64.44 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 636 | 64.48 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 660 | 64.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 6 |
| 678 | 64.56 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 679 | 64.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 717 | 64.61 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 727 | 64.63 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 5 |
| 797 | 64.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 859 | 64.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 910 | 64.94 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 920 | 64.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 946 | 65.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 947 | 65.00 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 17 |